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gtaagtcccatttgtattattttttcatttgtaactatttattgtttgacatcatctttggtatctaaacaaaaaaaagacttatgttttatccatctcatgtagAAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAAATTACAGAATCTCGTCGAACTTAGGTTGGATAGGAATAGATTGAAGGGA
species | Zea mays |
transcript | GRMZM2G119759_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGT AAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAAEST: gi|18660681|gb|BM500991.1|BM500991
genomic: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGTgtaagtccca ... tctcatgtagAAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAA
EST: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGT AAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAAEST: gi|50335670|gb|CO530796.1|CO530796
genomic: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGTgtaagtccca ... tctcatgtagAAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAA
EST: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGT AAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAAEST: gi|71770669|gb|DR968606.1|DR968606
genomic: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGTgtaagtccca ... tctcatgtagAAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAA
EST: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGT AAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAA
genomic: ACTGGACCGATCCCTTCCGAATTAGGTGGCTTGAGCAGTGTGAGCATAGTgtaagtccca ... tctcatgtagAAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAA
atcatctttggtatctaaacaaaaaaaagacttatgttttatccatctcatgtagAAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAAATTACAGAATCTCGTCGAACTTAGGTTGGATAGGAATAGATTGAAGGGA
atctaaa putative branch site (score: 3)
tccatctc putative PPT
taaacaaaaaaaagac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtcccatttgtattattttttcatttgtaactatttattgtttgacatcatctttggtatctaaacaaaaaaaagacttatgttttatccatctcatgtagAAATTTCCATTCCAATGGGTTGACTGGGAATATACCGTCGGAGCTGGGAAAATTACAGAATCTCGTCGAACTTAGGTTGGATAGGAATAGATTGAAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG