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gtatgtgccttttatttcgcaaagcttttgtgatttgttttccttatggatactttgtagatttgagttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
species | Zea mays |
transcript | GRMZM2G111510_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAG GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGEST: gi|78088731|gb|DV517124.1|DV517124
genomic: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAGgtatgtgcct ... ttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
EST: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAG GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGEST: gi|33095039|gb|CF055033.1|CF055033
genomic: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAGgtatgtgcct ... ttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
EST: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAG GATCATGACCGTGACAAGTTGCACAAATTGGAGGAGEST: gi|71432126|gb|DR813176.1|DR813176
genomic: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAGgtatgtgcct ... ttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
EST: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAG GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGEST: gi|28984330|gb|BQ538995.2|BQ538995
genomic: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAGgtatgtgcct ... ttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
EST: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAG GATCATGACCGTGACAAGTTGCACAAATTGGTGGAGEST: gi|32932991|gb|CF037803.1|CF037803
genomic: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAGgtatgtgcct ... ttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
EST: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAG GATCATGACCGTGACAAGTTGCACAAATTGGAGGAG
genomic: CATACCCATTATTTCCAATGTCAAATCTGAAGGGGTTTGATTCAATTGAGgtatgtgcct ... ttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
agcttttgtgatttgttttccttatggatactttgtagatttgagttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
atttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgccttttatttcgcaaagcttttgtgatttgttttccttatggatactttgtagatttgagttgcatgcagGATCATGACCGTGACAAGTTGCACAAATTGGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG