1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaattagagggaagcaattacttttccaatcttatgcggttcaattcagcctgtcttgagcttattggtggtgaactataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAAGTGGAGGAGGAGGTTGCAATGTTCTGCCCCATGATATGTCGTGAAATTG
species | Zea mays |
transcript | GRMZM2G109725_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCG GCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAAEST: gi|31361248|gb|CD445605.1|CD445605
genomic: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCGgtaattagag ... actataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAA
EST: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCG GCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAAEST: gi|67020706|gb|CO449455.1|CO449455
genomic: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCGgtaattagag ... actataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAA
EST: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCG GCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAAEST: gi|86465688|gb|DY232061.1|DY232061
genomic: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCGgtaattagag ... actataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAA
EST: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCG GCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAA
genomic: GTTAGCAGTAATAAAACCAGAGGTACAATCCCCTGCAGCCCCCCTCTCCGgtaattagag ... actataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAA
tcttatgcggttcaattcagcctgtcttgagcttattggtggtgaactataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAAGTGGAGGAGGAGGTTGCAATGTTCTGCCCCATGATATGTCGTGAAATTG
aactataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattagagggaagcaattacttttccaatcttatgcggttcaattcagcctgtcttgagcttattggtggtgaactataacagGCGTTAAAGACTTATATCTGGCTTCAGTGCTTTGATGGTTCCATTCAGCAAGTGGAGGAGGAGGTTGCAATGTTCTGCCCCATGATATGTCGTGAAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG