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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatttggctatacactactttcattgcgctcagcttctttagaagtgatgattagcttgtatcttggttctatattaagcctgtcttgttgaatttcagGATTTCTTTGAGGACATTGCACCACTACTTAGCTTGCAATTGGGTGGTTCATCAATGGATGGGATCACACAAATTTTCAATTCATATGTAAACTTGCTTA

Basic information

species Zea mays
transcript GRMZM2G105652_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G105652_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g10110.1 (Oryza sativa), 3'ss of exon 3
atatttggctatacactactttcattgcgctcagcttctttagaagtgatgat-tagcttgtatcttggttctatattaagcctgtcttgttgaatttcagGATTTCTTTGAGGACATTGCACCACTACTTAGCTTGCAATTGGGTGGTTCATCAATGGATGGGATCACACAAATTTTCAATTCATATGTAAACTTGCTTA
  |||  |||          |          |||  ||||||    |  || | ||   |  |   ||     |   |  |  |  | |||  | || ||||| |||||||| ||  |||| || || |||||||||||||| ||||||||  |||||||||  || ||  ||||||||||||||||||| || ||||| |
gcattcagcttcttttggagtgacgcttaaccagtatctttaccctttctggtgtaatatacactgtgtcctcaatcttggtattgcatgt-aatttgcagGAGTTCTTTGAAGATGTTGCGCCGCTGCTTAGCTTGCAATTAGGTGGTTCTACAATGGATGACATAACTAAAATTTTCAATTCATATGTCAATTTGCTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgatgattagcttgtatcttggttctatattaagcctgtcttgttgaatttcagGATTTCTTTGAGGACATTGCACCACTACTTAGCTTGCAATTGGGTGGTTCATCAATGGATGGGATCACACAAATTTTCAATTCATATGTAAACTTGCTTA
                                       tcttgtt  CT-rich tract
                       ttctatattaa  TA-rich tract