1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gttcctctccagtttttgggatcgattagtttctcttttatgtttctcagttagtgcttatgaatggctgcagtgatccttagctacttttcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGGGGACACCATTTCATACCTTACTTGCTGAAGGCTTTGCAGATGGACCTA
species | Zea mays |
transcript | GRMZM2G104449_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGEST: gi|149078013|gb|EE166751.2|EE166751
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGEST: gi|71429317|gb|DR810367.1|DR810367
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGEST: gi|76014645|gb|DT941815.1|DT941815
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGEST: gi|211453618|gb|FL253931.1|FL253931
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGEST: gi|149084046|gb|EE173442.2|EE173442
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGEST: gi|93284538|gb|EB676802.1|EB676802
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGEST: gi|211288219|gb|FL395056.1|FL395056
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
EST: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAG GTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
genomic: GGGACGGACGATCTTCCAAGGTCCATGGGCTGCCACAGAAGGAGTGGAAGgtatgcatca ... tcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAG
ctcagttagtgcttatgaatggctgcagtgatccttagctacttttcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGGGGACACCATTTCATACCTTACTTGCTGAAGGCTTTGCAGATGGACCTA
ctacttttc CT-rich tract
ttatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcctctccagtttttgggatcgattagtttctcttttatgtttctcagttagtgcttatgaatggctgcagtgatccttagctacttttcgttggcagGTGAAGCAAGATACAGACCAATTAAGAGTGATGTACCGTGAGGGTCCAGAGGGGACACCATTTCATACCTTACTTGCTGAAGGCTTTGCAGATGGACCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA