1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatatctcggtagatctgtcaacaattttctccattatccatcttttgctgtgcactccaaaagcacccaacgatttttgttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAGACTGGGAAGATGCGACACCACTAATGAAAGAATTGGAATTTAAACCTA
species | Zea mays |
transcript | GRMZM2G092131_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|91048511|gb|EB158929.1|EB158929
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|149077854|gb|EE166581.2|EE166581
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|101390617|gb|EB817243.1|EB817243
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|93015506|gb|EB641026.1|EB641026
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTATATCTCGGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCEST: gi|76932735|gb|DV173138.1|DV173138
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGT-T-----G----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGC
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|101398534|gb|EB821140.1|EB821140
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|71771111|gb|DR969048.1|DR969048
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|71441696|gb|DR831412.1|DR831412
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|71435233|gb|DR816283.1|DR816283
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|211084845|gb|FL280289.1|FL280289
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAA GTTGATGATGCTAT
genomic: ACTACACTATCTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAgtatatctcg ... ttgttttcagGTTGATGATGCTAT
tatccatcttttgctgtgcactccaaaagcacccaacgatttttgttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAGACTGGGAAGATGCGACACCACTAATGAAAGAATTGGAATTTAAACCTA
tttttgttgttttc CT-rich tract
atttttgttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctcggtagatctgtcaacaattttctccattatccatcttttgctgtgcactccaaaagcacccaacgatttttgttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAGACTGGGAAGATGCGACACCACTAATGAAAGAATTGGAATTTAAACCTA
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