1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ggttcatggggttgacttcgttatcattctaataatatcataagtatttttctaccaatgcgacttttgttaataatgatgttccatggttcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCAAGTCCACAGGGTCATCCTTTCATGTGGGGAGCTCAA
species | Zea mays |
transcript | GRMZM2G088140_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCAEST: gi|9952446|gb|BE639029.1|BE639029
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: TATCCAGATTGGTCTAGCTTCCAG GCATATCCCCCAATCCCACCACATGGATTCTTTCCCTCACCTGGGGCATCAEST: gi|60355311|gb|DN222284.1|DN222284
genomic: TATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCAEST: gi|211355418|gb|FL036286.1|FL036286
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCAEST: gi|211496289|gb|FL041701.1|FL041701
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
EST: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTRGCTTCCAG GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCAEST: gi|71442579|gb|DR823629.1|DR823629
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCA
EST: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAG GCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCGCCTGTGGCATCA
genomic: CCTCAGGTGCTGCAATACCACCTGTTTATCCAGATTGGTCTAGCTTCCAGgtgagcgtga ... tcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCA
atttttctaccaatgcgacttttgttaataatgatgttccatggttcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCAAGTCCACAGGGTCATCCTTTCATGTGGGGAGCTCAA
tgttaat putative branch site (score: 3)
ttcttttgc putative PPT
ttttgttaataatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttcatggggttgacttcgttatcattctaataatatcataagtatttttctaccaatgcgacttttgttaataatgatgttccatggttcttttgcagGCATATCCCCCAATCCCACCACATGGATTCTTCCCCTCACCTGTGGCATCAAGTCCACAGGGTCATCCTTTCATGTGGGGAGCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA