1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagctgagacctgaacaaaatgctcaagaaatgttgtgatatggttcccgtcctacagATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCGGAGAAGGTGATCACCGCCTTCGGTCCGGAGGTCATCGGAGAGAACGTGGAAGGGAAGGT
species | Zea mays |
transcript | GRMZM2G087590_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGGAAGGCCGGCTGTTCGTCATCGTGGCCCCAGTTCGCCGGTTCGCAG ATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCGGAGAAGGTGAEST: gi|149109559|gb|EE190265.2|EE190265
genomic: CAAGGAAGGCCGGCTGTTCGTCATCGTGGCCCCAGTTCGCCGGTTCGCAGgtgagctgag ... cgtcctacagATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCGGAGAAGGTGA
EST: CAAGGAAGGCCGGCTGTTCGTCATCGTGGCCCCAGTTCGCCGGTTCGCAG ATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCCGGAGAAG-TGEST: gi|149102821|gb|EE188292.2|EE188292
genomic: CAAGGAAGGCCGGCTGTTCGTCATCGTGGCCCCAGTTCGCCGGTTCGCAGgtgagctgag ... cgtcctacagATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCC-GGAGAAGGTG
EST: CAAGGAAGGCCGGCTGTTCGTCATCGTGGCCCCAGTTCGCCGGTTCGCAG ATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCGGAGAAGGTGA
genomic: CAAGGAAGGCCGGCTGTTCGTCATCGTGGCCCCAGTTCGCCGGTTCGCAGgtgagctgag ... cgtcctacagATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCGGAGAAGGTGA
ctgagacctgaacaaaatgctcaagaaatgttgtgatatggttcccgtcctacagATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCGGAGAAGGTGATCACCGCCTTCGGTCCGGAGGTCATCGGAGAGAACGTGGAAGGGAAGGT
ttcccgtcct CT-rich tract
aacaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgagacctgaacaaaatgctcaagaaatgttgtgatatggttcccgtcctacagATGACCTGGACGACGCGACCATCGAGAAGATCGGCAGCCCGGAGAAGGTGATCACCGCCTTCGGTCCGGAGGTCATCGGAGAGAACGTGGAAGGGAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG