1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatgacttcaaatgttttagtattcatatttcttttctctctccttaatctattgctcatccagctcgtagttttaacaatatacattattttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATGTGCCAAATTCTAAAACATTAGTCGACTTTGATTTTGATGAAAATAAG
species | Zea mays |
transcript | GRMZM2G087105_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|211303809|gb|FL321304.1|FL321304
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCCGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|76021370|gb|DT948540.1|DT948540
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|74238280|gb|DT646194.1|DT646194
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|50337804|gb|CO532930.1|CO532930
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|6021302|gb|AW066230.1|AW066230
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCCGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|211108624|gb|FL325821.1|FL325821
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCCGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|37422877|gb|CF649154.1|CF649154
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|211267657|gb|FL340177.1|FL340177
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCCGCCTTTGGTCTGCTGAAAGCTGCAAATTCAEST: gi|211231251|gb|FL350932.1|FL350932
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCA
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCCGCCTTTGGTCTGCTGAAAGEST: gi|211475490|gb|FL344064.1|FL344064
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAG
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCCGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTEST: gi|71441001|gb|DR822051.1|DR822051
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|148986029|gb|EE029876.2|EE029876
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|148991227|gb|EE032692.2|EE032692
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATEST: gi|78085484|gb|DV513877.1|DV513877
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
EST: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAG ATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
genomic: CCTTGTGCCGTATGAAGAGTGGTTTAATTTTAACTGGAGTTGGAGATAAGgtgggtgctg ... ttttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAAT
ttaatctattgctcatccagctcgtagttttaacaatatacattattttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATGTGCCAAATTCTAAAACATTAGTCGACTTTGATTTTGATGAAAATAAG
ttttaac putative branch site (score: 89)
ttattttttcc putative PPT
tagttttaacaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgacttcaaatgttttagtattcatatttcttttctctctccttaatctattgctcatccagctcgtagttttaacaatatacattattttttccagATTCTCTGCCTTTGGTCTGCTGAAAGCTGCAAATTCATGAATGAGTACAATGTGCCAAATTCTAAAACATTAGTCGACTTTGATTTTGATGAAAATAAG
- - - - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - ctattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaata