1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgatatttccgtaagttcgctcctatttttcctcggtatggttctactccagtatttgctttgttttggtaaacaaagtactggtgaacccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAGCTTGAGAATCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG
species | Zea mays |
transcript | GRMZM2G087095_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|6695990|gb|AW289098.1|AW289098
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|211463197|gb|FL126646.1|FL126646
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: TATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|50331176|gb|CO526302.1|CO526302
genomic: TATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|74236437|gb|DT644351.1|DT644351
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|78122333|gb|DV540717.1|DV540717
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|32838769|gb|CD978450.1|CD978450
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|91870871|gb|EB401123.1|EB401123
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|8368837|gb|BE051782.1|BE051782
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|76285512|gb|DV025080.1|DV025080
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|71425166|gb|DR806565.1|DR806565
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|71421466|gb|DR805441.1|DR805441
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|71330056|gb|DR801767.1|DR801767
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|32847296|gb|CD986977.1|CD986977
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|71421467|gb|DR805442.1|DR805442
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|76285511|gb|DV025079.1|DV025079
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|32835484|gb|CD975162.1|CD975162
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|211463199|gb|FL126648.1|FL126648
genomic: GCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAEST: gi|71425163|gb|DR806564.1|DR806564
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
EST: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAG GAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
genomic: GAATATGTGAAGCTGAAGGCACGAGTTGAGGTTTTACAGCACTCACAAAGgtacgatatt ... cccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCA
ctactccagtatttgctttgttttggtaaacaaagtactggtgaacccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAGCTTGAGAATCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatatttccgtaagttcgctcctatttttcctcggtatggttctactccagtatttgctttgttttggtaaacaaagtactggtgaacccgctgcagGAATCTTCTTGGTGAAGATCTGGCCCTACTTAGCCCAAGTGAACTTGACCAGCTTGAGAATCAAGTAGACAAGACCTTGAAGCAAATAAGATCAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
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