1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttagtatcaaccctagaattatggttaaggctgtatcatatccttcaatgtccagaaaataatgaccattgtttttcttctgtgttgctctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGATTGAAAAGTACAAAGGAAAGTTAGTAGTGAAGGAACCACCAAGAGCT
species | Zea mays |
transcript | GRMZM2G083262_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCTAGTTGCTCCTCCNCTTTATGTTTTGACCNCACAGACCCTTGNCAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|61117519|gb|DN558480.1|DN558480
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GACCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|37390451|gb|CF632455.1|CF632455
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60400978|gb|DN233785.1|DN233785
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GACCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60337847|gb|DN204820.1|DN204820
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60351270|gb|DN218243.1|DN218243
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|74235505|gb|DT643419.1|DT643419
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|166571705|gb|EG281233.1|EG281233
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: CTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|24763866|gb|CA399037.1|CA399037
genomic: CTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|37381588|gb|CF627690.1|CF627690
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60353715|gb|DN220688.1|DN220688
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GACCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|29577089|gb|CB617201.1|CB617201
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60352316|gb|DN219289.1|DN219289
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GACCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60400924|gb|DN233731.1|DN233731
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GACCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60351973|gb|DN218946.1|DN218946
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GACCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|28982561|gb|BQ538174.2|BQ538174
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|4804073|gb|AI665939.1|AI665939
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCC-CTTTATGTTTTGACC-CCCAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|13149573|gb|BG319895.1|BG319895
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|60354041|gb|DN221014.1|DN221014
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GACCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGEST: gi|78023586|gb|DV491973.1|DV491973
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
EST: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAG GATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
genomic: AGCTAGTTGCTCCTCCACTTTATGTTTTGACCACACAGACCCTTGACAAGgttggcatta ... ctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAG
tcaatgtccagaaaataatgaccattgtttttcttctgtgttgctctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGATTGAAAAGTACAAAGGAAAGTTAGTAGTGAAGGAACCACCAAGAGCT
tttttcttctgtgttg CT-rich tract
agaaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagtatcaaccctagaattatggttaaggctgtatcatatccttcaatgtccagaaaataatgaccattgtttttcttctgtgttgctctttgaacagGATCAAGGCATTTCAGTTCTCACTACTGCAGTCAAGGCTTGTACAGCAGAGATTGAAAAGTACAAAGGAAAGTTAGTAGTGAAGGAACCACCAAGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - -ctgtatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct