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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattacctgaaggctaccattagcagtcttacttagtaaaattatcattactttaatctctttttgcaatctgtctagcagttaatttcattatttgatatgtgcttgatggtctctgtatgcccatattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA

Basic information

species Zea mays
transcript GRMZM2G082924_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082924_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g14150.5 (Oryza sativa), 3'ss of exon 2
-----gtaaattacctgaaggctaccattagcagtc--ttacttagtaaaattat---cattactttaatctctttttgcaatctgtctagca--gttaatttcattattt---gatatgtgcttgatggtctctgtatgcccatattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA
      |   |||  |    |  ||   | | |     ||  ||  | | | |||    ||   |||   |  |||  |   |     | | |  ||| |   ||  ||||   ||||  | ||  |   | ||  | ||   |  ||| ||||||||||||||||||| |||||||||||||| || || |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
gtgaaatgctttatttatctgtcactgctcgtaaatcatttgttcatgagaatatgtgtatccgtttgggccttttgcgtgttaaacttcgaattgtttaccacaccattttcggatagctactc-acattgtcgttctgttaaattttcagGCTTGCAAAAAGCTCGGAAAAATCGAGCTCTCAGATTGTGAAATTTACGCGTCTTGTGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGGA

upper sequence: GRMZM2G082924_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA20G37210.1 (Glycine max), 3'ss of exon 3
gtaaattacctgaaggctaccattagcagtcttacttagtaaaattatcattactttaatctctttttgcaatctgtctagcagttaattt-cattatttgatatgtgcttgatggtctctgtatgcccatattt-tagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA
                                     |   | |||   ||| | | || | | |     | |||   ||    ||||| | ||| ||||    ||| | | ||| | |   | ||     || | ||||||||  |||||||     |||| || ||  ||||||| ||||| || || || |||||||| || |||||||||||||||||| ||||||| ||  |||
----------------------------------tgaaaccacatttatatttcctaaaccacatcacttattctacttatttcttaatatacatcattt----tgtacctcatgttata-atttgatatcatctatagGCTTGTCAAAAGCTGAATCAAATTGAACTTGCTGACTGTGAAATCTATGCTTCTTGCGAGCCTTGTCCAATGTGCTTTGGTGCAATTCATCTTTCAAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30160666|gb|CB924395.1|CB924395
EST:     TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG                         GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: gi|31628205|gb|CD526493.1|CD526493
EST:     TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG                         GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: gi|24462578|gb|BM660109.1|BM660109
EST:     TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG                         GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: gi|15632335|gb|BI679428.1|BI679428
EST:     TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG                         GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: gi|60345427|gb|DN212400.1|DN212400
EST:     TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG                         GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
EST: gi|44681911|gb|CK786959.1|CK786959
EST:     TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAG                         GCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG
genomic: TGAAGCACACTGACCCTACTGCGCATGCTGAAGTAACTGCAATTAGAGAGgtaaattacc ... catattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttaatttcattatttgatatgtgcttgatggtctctgtatgcccatattttagGCTTGCAAAAAGCTCGGGAAAATCGAGCTCTCTGACTGCGAAATTTACGCGTCCTGCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAA
     atttcattatttgata  TA-rich tract