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...tgtagaactgtaatcataagtgttatagtaagtggttgtggatgtgataactcaaagtttctgcaaaatgtgtgtctttatatgccatatatgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATTTGCTAAAAGATAAGCAAGCACTGCAGCGATTGACAGAAGCAGCTGAGA
species | Zea mays |
transcript | GRMZM2G079668_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAG AGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATEST: gi|71446645|gb|DR827695.1|DR827695
genomic: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGgttagtcatt ... atgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
EST: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAG AGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATEST: gi|19058069|gb|BM736736.1|BM736736
genomic: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGgttagtcatt ... atgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
EST: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAG AGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATEST: gi|87153250|gb|DY398039.1|DY398039
genomic: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGgttagtcatt ... atgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
EST: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAG AGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATEST: gi|71761337|gb|DR959274.1|DR959274
genomic: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGgttagtcatt ... atgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
EST: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAG AGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATEST: gi|22490415|gb|BU050338.1|BU050338
genomic: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGgttagtcatt ... atgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
EST: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAG AGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATEST: gi|78080017|gb|DV508429.1|DV508429
genomic: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGgttagtcatt ... atgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
EST: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAG AGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
genomic: TGCTGTCTACATCAGGTGACACTCACCTTGGTGGTGATGACTTTGACAAGgttagtcatt ... atgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGAT
gataactcaaagtttctgcaaaatgtgtgtctttatatgccatatatgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATTTGCTAAAAGATAAGCAAGCACTGCAGCGATTGACAGAAGCAGCTGAGA
tgataac putative branch site (score: 311)
tgctttc putative PPT
tctttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtagaactgtaatcataagtgttatagtaagtggttgtggatgtgataactcaaagtttctgcaaaatgtgtgtctttatatgccatatatgctttcagAGAATTGTAGATTGGCTCGCTGGGAACTTCAAGAATGATGAGGGTATTGATTTGCTAAAAGATAAGCAAGCACTGCAGCGATTGACAGAAGCAGCTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA