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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttctccaagctgtgaattaaatagtatgttcattagcacttctccaccctgatcttgttgctttcccttttgcagCCTTCAAGAGCATCTCTTCTATCTGAGTTGGTATGTGCTGTTTTCCTGCAGCTGTGTTATCCATTTTTTTGGATGTTGTCTCTGTCATCACATGCATTCT

Basic information

species Zea mays
transcript GRMZM2G070487_T04
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32931023|gb|CF035835.1|CF035835
EST:     CCAACCTTGTTAACTTCTCGCTTGATTCCAAGCGTAAAAATAGG-AAATG                         CCTTCAAGAGCATCTCTTCTATCTGAGTTGG
genomic: CCAACCTTGTTAACTTCTCGCTTGATTCCAAGCGTGAAAATAGGGAAATGgtttgttctc ... ccttttgcagCCTTCAAGAGCATCTCTTCTATCTGAGTTGG
EST: gi|32945556|gb|CF050375.1|CF050375
EST:     CCAACCTTGTTAACTTCTCGCTTGATTCCAAGCGTGAAAATNNNNNNNTG                         CCTTCAAGAGCATCTCTTCTATCTGAGTTGG
genomic: CCAACCTTGTTAACTTCTCGCTTGATTCCAAGCGTGAAAATAGGGAAATGgtttgttctc ... ccttttgcagCCTTCAAGAGCATCTCTTCTATCTGAGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtatgttcattagcacttctccaccctgatcttgttgctttcccttttgcagCCTTCAAGAGCATCTCTTCTATCTGAGTTGGTATGTGCTGTTTTCCTGCAGCTGTGTTATCCATTTTTTTGGATGTTGTCTCTGTCATCACATGCATTCT
                          ccctgat  putative branch site (score: 4)
                                tcttgttgctttccct  CT-rich tract
        ttcatta  TA-rich tract