1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgagaaaagcataaagactctgggtcttcatattgggcatttttgtatgctgtttatttgcttctggacattgacatgttgtcttgtttcaactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG
species | Zea mays |
transcript | GRMZM2G065757_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATACGCTATGGAACTGEST: gi|29576941|gb|CB617053.1|CB617053
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTG
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGEST: gi|149095835|gb|EE181486.2|EE181486
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTG
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|149078470|gb|EE167250.2|EE167250
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|32830382|gb|CD970060.1|CD970060
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|32840007|gb|CD979688.1|CD979688
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGGCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|32850768|gb|CD990449.1|CD990449
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTACTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|211063419|gb|FL406486.1|FL406486
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAAEST: gi|211314123|gb|FL216094.1|FL216094
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATEST: gi|50338072|gb|CO533198.1|CO533198
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCAT
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|32839505|gb|CD979186.1|CD979186
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|211514658|gb|FK981816.1|FK981816
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGTTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|32839962|gb|CD979643.1|CD979643
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGGCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|32839693|gb|CD979374.1|CD979374
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|148956524|gb|EC902364.2|EC902364
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|211092714|gb|FK945554.1|FK945554
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCEST: gi|211312095|gb|FL216082.1|FL216082
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGC
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|148931369|gb|EC874278.2|EC874278
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAEST: gi|33099258|gb|CF059218.1|CF059218
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
EST: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACG GAAAACCTGCTGCCATTCGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
genomic: CTTCCACTCGCGCTACAAGTCAGGGCAGTCAAGCACTTACAAGAAGAACGgtttgactct ... aactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCA
tatgctgtttatttgcttctggacattgacatgttgtcttgtttcaactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG
cattgac putative branch site (score: 1048)
ctctct putative PPT
tgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagaaaagcataaagactctgggtcttcatattgggcatttttgtatgctgtttatttgcttctggacattgacatgttgtcttgtttcaactctctagGAAAACCTGCTGCCATACGCTATGGAACTGGTTCCATTGCTGGTTTTTTCAGTGAGGATAGCGTTACATTAGGTGATCTGGTTGTGAAGGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-gagaaaag
- - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - -tgtatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgttt