Sequence
atgc intronic sequence ATGC exonic sequencegtgagatactctcttgccttctattgatgctatgagctcttatcttatataatctataatctgagctagatctttttccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G053764_T06 (Zea mays), 3'ss of exon 3
lower sequence: Vv02s0025g00070.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------gtgagatactctcttgccttctattgatgctatgagctcttatcttatataatctataatct-gagctagatctttttccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
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gtaagataatgtcctacaatatttctttttccgtggcttctactaacttcaaagtcatgttccttttgctcatag-attcttccttgttttatcagttgtctgcttaagaagttgatatctttcttttttatttattaacagATTTGGTAAATGTGTTTGAAGTGTTTCTTCCTCAACTTCTTCTCTACCCCAACCCATCAGATCCATTGAATGGAGAGGCTGCAGCCCTGATGATGCGAGA
upper sequence: GRMZM2G053764_T06 (Zea mays), 3'ss of exon 3
lower sequence: Vv15s0046g02280.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------gtgagatactctcttgccttctattgatgctatgagctcttatcttatataatctataatctgagctag----atctttt-tccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
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gtaatgattaacaaactcatttggcattcttgttcgataaataggacttccgcatcgtttctctggagaaaaaacaaagctactttttagttttaatggtttgagctactgttatcgtatgttgacacctgtgttttccagATCTGGTAAACGTGTTTGAGGTGTTCCTTCCGCAACTTCTTTTGTATCCCAACCCATCAGATCCATTAAATGGAGAGGCTGCAGCTCTAATGATGCGTGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76931861|gb|DV172876.1|DV172876EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
EST:
gi|76294184|gb|DV033752.1|DV033752EST: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTG ATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
genomic: TGGCTCTGTATGTTTAGATGTCATAAACCAAACATGGAGCCCAATGTTTGgtgagatact ... tcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcttatataatctataatctgagctagatctttttccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
tctttttccacattcc CT-rich tract
atataatctataatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagatactctcttgccttctattgatgctatgagctcttatcttatataatctataatctgagctagatctttttccacattcctcttttgcagATCTAGTAAATGTTTTTGAAGTATTCCTTCCACAGCTGTTACTATATCCAAATCCTTCTGATCCATTAAATGGGGAGGCTGCAGCACTGATGATGCGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG