1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgtattcatcatgtacctgacatttccaaaatagtttgacaatattttctgagttttgtttgctgtttttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTTGTAAATAATGCTCGAGGAGCAATCATGGATGCTCAAGCAGTCGCAGAT
species | Zea mays |
transcript | GRMZM2G049811_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|4887424|gb|AI677523.1|AI677523
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGAEST: gi|67016279|gb|CO445028.1|CO445028
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGA
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|78025682|gb|DV494069.1|DV494069
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|193502113|gb|AM937924.1|AM937924
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|211347565|gb|FL462325.1|FL462325
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|211273135|gb|FL031458.1|FL031458
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|7216776|gb|AW562898.1|AW562898
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|60344797|gb|DN211770.1|DN211770
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|60346732|gb|DN213705.1|DN213705
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|149098748|gb|EE184760.2|EE184760
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CAAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATEST: gi|78543856|gb|DV621354.1|DV621354
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGAT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|32844007|gb|CD983688.1|CD983688
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|9952240|gb|BE638823.1|BE638823
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|60338901|gb|DN205874.1|DN205874
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|14244609|gb|BG842547.2|BG842547
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|32863792|gb|CF003474.1|CF003474
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|29544962|gb|CB605140.1|CB605140
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|24764385|gb|CA399550.1|CA399550
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|14244598|gb|BG842536.2|BG842536
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|211273136|gb|FL031459.1|FL031459
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: AAGTGTGATGTGATTGTGATCAACACACCTTCT-ACGGAGGAAACAAAGEST: gi|84969946|gb|DW468339.1|DW468339
genomic: AAGTGTGATGTGATTGTGATCAACACACCT-CTTACGGAGAAAACAA-G
EST: CAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|60351068|gb|DN218041.1|DN218041
genomic: CAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|32849315|gb|CD988996.1|CD988996
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|87156832|gb|DY401621.1|DY401621
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|4967219|gb|AI692105.1|AI692105
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACCCCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|31359127|gb|CD443484.1|CD443484
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGGGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|60352560|gb|DN219533.1|DN219533
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|14204312|gb|BG837989.1|BG837989
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|30705800|gb|CD058924.1|CD058924
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|4886219|gb|AI677339.1|AI677339
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACCCCCCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|149098747|gb|EE184759.2|EE184759
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|67026478|gb|CO455227.1|CO455227
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACNGAGAAA-CAAG AG-CATGTTTAACNAAGAGAGGATEST: gi|149100378|gb|EE186449.2|EE186449
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGAT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|24769726|gb|CA404855.1|CA404855
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAACCAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|24763748|gb|CA398919.1|CA398919
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|24769660|gb|CA404789.1|CA404789
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|24773911|gb|CA409165.1|CA409165
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: TGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|7227669|gb|AW566310.1|AW566310
genomic: TGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
tttccaaaatagtttgacaatattttctgagttttgtttgctgtttttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTTGTAAATAATGCTCGAGGAGCAATCATGGATGCTCAAGCAGTCGCAGAT
gtttgac putative branch site (score: 423)
ttttgtttgctgtttt putative PPT
aaaatagtttgacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtattcatcatgtacctgacatttccaaaatagtttgacaatattttctgagttttgtttgctgtttttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTTGTAAATAATGCTCGAGGAGCAATCATGGATGCTCAAGCAGTCGCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT