1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cgtttgtccttgttttgatcttgcgtagttccgctcggtgttgatccttttttgtttccatccaagcactatctcctaacttctcatatggttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGC
species | Zea mays |
transcript | GRMZM2G046748_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAATGATATCATTATGGCCAGGGTCTTTGCTCATCAG GATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTCEST: gi|211274950|gb|FL031478.1|FL031478
genomic: TAATGATATCATTATGGCCAGGGTCTTTGCTCATCAGgtttggtcat ... gttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTC
EST: TACTTTCTGGCTATAATGATATCATTATGGCCAGGGTCTTTGCTCATCAG GATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTCEST: gi|78111650|gb|DV530047.1|DV530047
genomic: TACTTTCTGGCTATAATGATATCATTATGGCCAGGGTCTTTGCTCATCAGgtttggtcat ... gttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTC
EST: TAATGATATCATTATGGCCAGGGTCTTTGCTCATCAG GATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTCEST: gi|76021130|gb|DT948300.1|DT948300
genomic: TAATGATATCATTATGGCCAGGGTCTTTGCTCATCAGgtttggtcat ... gttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTC
EST: TACTTTCTGGCTATAATGATATCATTATGGCCAGGGTCTTTGCTCATCAG GATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTCEST: gi|211274953|gb|FL031481.1|FL031481
genomic: TACTTTCTGGCTATAATGATATCATTATGGCCAGGGTCTTTGCTCATCAGgtttggtcat ... gttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTC
EST: TACTTTCTGGCTATAATGATATCATTATGGCCAGGGTCTTTGCTCATCAG GATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTC
genomic: TACTTTCTGGCTATAATGATATCATTATGGCCAGGGTCTTTGCTCATCAGgtttggtcat ... gttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTC
ccttttttgtttccatccaagcactatctcctaacttctcatatggttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGC
tcctaac putative branch site (score: 1)
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtttgtccttgttttgatcttgcgtagttccgctcggtgttgatccttttttgtttccatccaagcactatctcctaacttctcatatggttttgacagGATATTCTGGACTTGGCAAAATATGCAGCTGTACCTGTCATAAATGGTCTCACCGACTATAACCATCCATGCCAGATAATGGCTGATGCACTTACTATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT