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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taccgaggagcagattaaagttaaccaattaggtacaaatctttaagttttgaattgttgatactgttatttaatcttctctttcctgtaacttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGCGATAAG

Basic information

species Zea mays
transcript GRMZM2G043737_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043737_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g35090.1 (Oryza sativa), 3'ss of exon 3
-taccgaggagcagattaaagttaaccaattaggtacaaatctttaagttttgaattgttgatactgttatttaatcttctctttcctgtaacttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGCGATAAG
 |     |  |  | ||    | |   |||  | |   | |||||     || ||| |  | |  |  |||    |    ||| |  ||  |  |||||||||||||   ||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
atgtgttgatgtggtttggtttaagttaatctgttcatagtctttcctgatttaatggaggctgattctatactgttgattctctt-tgcgatgtatgtagGGGCCCGCCTCGCTTTGAAGGGGACAGGCCAAGGTTTGGTGACAGAGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGTGAGAAG

upper sequence: GRMZM2G043737_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g34460.1 (Oryza sativa), 3'ss of exon 3
taccgaggagcagattaaagttaaccaattaggtacaaatctttaagttttgaattgttgatactgttatttaat---cttctctttcctgtaacttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGCGATAAG
 || ||||   |  |  | |||   |  ||   | |      |   ||    |  | ||     |||  |||       ||||  ||||||| |  | | ||||||||||  ||| || || || ||||| ||||||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||| |||||||| || |||
aactgaggcatatctgcatgtt---ctgttgaattcttgagctactgtggcaatattttctagttgtcgtttggctgatttctgattcctgtgatgtgtttagGGGCCCACCTCGGTTCGAAGGGGACAGACCAAGGTTTGGAGACCGGGATGGCTACCGTGGTGGACCTCGTGGTGCGCCTGGTGATTTTGGTGGTGAGAAG

upper sequence: GRMZM2G043737_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv02s0025g00310.t01 (Vitis vinifera), 3'ss of exon 3
-------------------------------------------------------------------------------------------taccgaggagcagattaaa--gttaaccaat-taggtacaaatctttaagttttgaattgttgatactgttatttaatcttctctttcctgtaacttatg-----tagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGCGATAAG
                                                                                                | |    ||||| |  || ||      |  ||    ||    | ||||||  ||   | |  | | || |||  |    |||  || || || ||      || || |||  ||| ||||| || || || ||||||||||||||| |||||||||||||||| ||||| || ||  |||| ||||| ||||||| | |    
gtaatgactcaattttgagttgatgttcggtgatttatttatttatttatttatttattattctgttgttaaacaatttggtgcgcattggggttaatggtttgattacaatgtgaattgggatctgtttggattgccatgttttgtttttgagttcttatgatgtaaaatgggttttgttgaaaattgtgattttcagTGGTCCACCTCGCTTTGAAGGAGATAGACCAAGGTTTGGTGACCGGGATGGGTACCGTGGAGGTCCACGAGGACCTCCAGGTGAGTTTGGTGACAAGGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29544618|gb|CB604998.1|CB604998
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGTCGTTTTGACGGCGACAGGCCAAG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAG
EST: gi|211515037|gb|FL346148.1|FL346148
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGAC-GCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGG
EST: gi|211037800|gb|FL314004.1|FL314004
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCATTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211055429|gb|FL333833.1|FL333833
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTG
EST: gi|211399300|gb|FL337153.1|FL337153
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACG-CGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211294086|gb|FL367910.1|FL367910
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211301951|gb|FL333160.1|FL333160
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211110806|gb|FL361655.1|FL361655
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGAC-GCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGT
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGT
EST: gi|211208251|gb|FL334757.1|FL334757
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACG-CGACAGGCCAAGGTTT
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTT
EST: gi|32940187|gb|CF045006.1|CF045006
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGTCGTTTTGACGACGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211531325|gb|FL321010.1|FL321010
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211510125|gb|FL332881.1|FL332881
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211399824|gb|FL353763.1|FL353763
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGC-AAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211220714|gb|FL342804.1|FL342804
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211075628|gb|FL344960.1|FL344960
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACG
EST: gi|47962307|gb|CN845016.1|CN845016
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211314838|gb|FL367457.1|FL367457
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GG-CCCAGGTCGTTTTGACGGCGACAGGC-AAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211505689|gb|FL351555.1|FL351555
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|32847043|gb|CD986724.1|CD986724
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211139135|gb|FL349878.1|FL349878
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAG
EST: gi|211189099|gb|FL366162.1|FL366162
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211061711|gb|FL342294.1|FL342294
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAG
EST: gi|211006695|gb|FL312880.1|FL312880
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211411379|gb|FL311386.1|FL311386
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|149101140|gb|EE187248.2|EE187248
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGGGACCGCCCAAG                         GGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211275821|gb|FL320750.1|FL320750
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGG
EST: gi|78088386|gb|DV516779.1|DV516779
EST:     AGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCCAAG                         GGGCCCAGGTCGTTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGAT
genomic: AGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCC-AAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTT-GACGGCGACAGGCCAAGGTTTGGTGACAGGGAT
EST: gi|211108541|gb|FL307924.1|FL307924
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTAACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211007678|gb|FL351108.1|FL351108
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGGCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211008036|gb|FL362430.1|FL362430
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGTCGTTTTGAC
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGAC
EST: gi|30031863|gb|CB833714.1|CB833714
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211329259|gb|FL352410.1|FL352410
EST:     AGCCACCTGGCCGCCCAATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGG
genomic: AGCCACCTGGCCGCCCA-TTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGG
EST: gi|211088205|gb|FL308837.1|FL308837
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGA
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGA
EST: gi|211033326|gb|FL329836.1|FL329836
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCC-TCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACG-CGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211446375|gb|FL309582.1|FL309582
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211503409|gb|FL355312.1|FL355312
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGAT
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGAT
EST: gi|9953025|gb|BE639608.1|BE639608
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|20811065|gb|BQ295543.1|BQ295543
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211212824|gb|FL307248.1|FL307248
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAC                         GGGCCCAGGCCGTTTTGACGGCGACAGGC
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGC
EST: gi|211110452|gb|FL325860.1|FL325860
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTT
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTT
EST: gi|211516693|gb|FL308814.1|FL308814
EST:     AGCCACCTGGCCGCCCAATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGGCCCAGGCCCGTTTTGACG
genomic: AGCCACCTGGCCGCCCA-TTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGG-CCCAGGTC-GTTTTGACG
EST: gi|211293220|gb|FL325936.1|FL325936
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCC-AGGCCGTTTTGACGGCGACAGGCCAAGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGG
EST: gi|211514425|gb|FL314345.1|FL314345
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGAACAGGCCAAGGTTTGGTGACAGGGATG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGA-CAGGCCAAGGTTTGGTGACAGGGATG
EST: gi|211180777|gb|FL318497.1|FL318497
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCC-TCCTGGTGACCGCCCAAG                         GGGSCCCAGGTCGTTTTGACGGCGACAGGGCAAGGTTTGGTGACAGGGATG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGG-CCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATG
EST: gi|19770365|gb|BQ035086.1|BQ035086
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|7135060|gb|AW497896.1|AW497896
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211041308|gb|FL354483.1|FL354483
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211062174|gb|FL359480.1|FL359480
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCC-TCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211532542|gb|FL366393.1|FL366393
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACG-CGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211430134|gb|FL338159.1|FL338159
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211278412|gb|FL366611.1|FL366611
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211041452|gb|FL359851.1|FL359851
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211059305|gb|FL364333.1|FL364333
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACG-CGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211323095|gb|FL366928.1|FL366928
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGA
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGA
EST: gi|211185498|gb|FL313588.1|FL313588
EST:     AAGCCACCTGGCCGCYCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCA
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCA
EST: gi|211103177|gb|FL312132.1|FL312132
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTT
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGG-CCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTT
EST: gi|211297425|gb|FL323406.1|FL323406
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GGGCCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
EST: gi|211494415|gb|FL313402.1|FL313402
EST:     AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAG                         GG-CCCAGGCCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG
genomic: AAGCCACCTGGCCGCCCATTTGGCTCTGGCCCTCCTGGTGACCGCCCAAGgtaaaagcct ... acttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttttgaattgttgatactgttatttaatcttctctttcctgtaacttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGCGATAAG
                                        ctgtaac  putative branch site (score: 3)
               atactgttatttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taccgaggagcagattaaagttaaccaattaggtacaaatctttaagttttgaattgttgatactgttatttaatcttctctttcctgtaacttatgtagGGGCCCAGGTCGTTTTGACGGCGACAGGCCAAGGTTTGGTGACAGGGATGGGTACCGTGGTGGTCCTCGTGGTGCTCCTGGTGACTTTGGTGGCGATAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG