Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtggtggatgcctccggtggtttgttctgaatgtgtctttgtatgtttctgatgagctttgttatgtgcagTGTTGTTCTAGCACATTTCACACTGAATGAGAAGTTGCATCGGGTGGGCGTGCTGGGCTGTGGTCTCTGCATTGTTGGGTCAACGATGATCATTCTACAT

Basic information

species Zea mays
transcript GRMZM2G037229_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037229_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g65310.1 (Oryza sativa), 3'ss of exon 3
---------------------------------------------------------gtatagtggtggatgcctccggtggtttgttctgaatgtgtctttgtatgtttctgatgagctttgttatgt-gcagTGTTGTTCTAGCACATTTCACACTGAATGAGAAGTTGCATCGGGTGGGCGTGCTGGGCTGTGGTCTCTGCATTGTTGGGTCAACGATGATCATTCTACAT
                                                         || |  | |||      |    ||  ||  |  | |||||  | |||||| ||||| |||  ||||||  |  | |||| |||||| |||||||| ||||||||||||||||| || ||||||||||||||||| |||| ||| || ||||||||||| ||| ||||||| || |||
gtagaatactagaattgaaattgttttagttggtgtccacatcatttgtaattcattgtttctttgtgtggatttgtactgaattactg-gtatgtgcatgtgtatgcttctggtga--tttgttggggagtagTGCTGTTCTGGCACATTTTACACTGAATGAGAAGTTACAGCGGGTGGGCGTGCTGGGATGTGTTCTTTGTATTGTTGGGTCGACGGTGATCATCCTCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggtttgttctgaatgtgtctttgtatgtttctgatgagctttgttatgtgcagTGTTGTTCTAGCACATTTCACACTGAATGAGAAGTTGCATCGGGTGGGCGTGCTGGGCTGTGGTCTCTGCATTGTTGGGTCAACGATGATCATTCTACAT
                              ttctgat  putative branch site (score: 3)
                                        ctttgtt  putative PPT
                                         tttgttat  TA-rich tract