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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaccattctttcgcaactcatgcccgtccattgaaatgattaatggtgatactaagtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAGGCCTCCAAGAACTAGGCGATATAG

Basic information

species Zea mays
transcript GRMZM2G032564_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 3
------gtgaccattctttcg-caact-catgcc-cgtccattgaaatgatt-aatggtgatacta-agtcacctgcatgtct-cagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAG--GCCTCCAAGAACTAGGCGATATAG
       | || |  ||||   || ||  ||         | |   |||||| ||| ||     || | | | ||     |||  ||||| ||||| ||||| || || || ||||| ||||| ||||||||||| ||||||||||| ||  | ||||| |||  | |  |||   || |   || |  
gtttgttttactagacttttaacagctatatattataataactcgtatgatttaattgtttgcttacatttatctctggttctatagGATTATCCGAGCCTTCTTAGTTGAAGAGCAAAAGATTGTGAAGAAGGTCTTGAAGATCCAGAAGGCAAAGGAAAAGCAGGCCTCAAAGGCTTGA--ATTTGA

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgaccattctttcgcaactcat-----gcccgtccattgaaatgattaatggtgatactaagtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAGGCC---TCCAAGAACTAGGCGATATAG
|| |   |  | |    ||   |         ||   || | |  |||     | || || | ||   |   |||  ||||||| || | ||||| ||||| || || |||||||| |||||||||||||||||| | || ||  | || || ||| |     | ||||  |||  || |   
gtaagtgtattgtaaagacctcttaaaaattggtttctttagagtattgcaactaat-cttactcttttctctgttccagGATCGTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAA---

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT1G69620.1 (Arabidopsis thaliana), 3'ss of exon 3
----------gtgaccattctttcgc--aactcatgcccgtccattgaaatgattaatggtgatactaagtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAGGCCTCCAAGAACTAGGCGATATAG----
          | |  || | ||         |  ||||  |  |   ||| ||  |||  | ||  |   ||   ||  |||  ||| ||||| ||||||||  | || |||||||| ||||| |||||||||||||||||| | || ||  | ||||| ||||   |      | | | ||| |||    
gttcgttcttgagttcaattttgtatttgctttgtgcctttgtaaccaaa-gacaaatcttaatggttgttc--ttgtgtgttacagAATCATTCGTGCCTTCCTTGTGGAGGAGCAAAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCAAAGGAAAAGGTTGCTC----CCAAGTGATCTAGACCC

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 3
--------gtgaccattct-ttcgcaactcatgcccgtccattgaaatgattaatggtgatactaagtcacctg--catgtctc---------------------agGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAG---GCCTCCAAGAACT-AGGCGATATAG
        |  |   |||| |||    ||||| |   ||  || | |||   | |  | | |  || |   |||  |||||||                      ||||||||| | ||||| || || ||||||||||| || |||||||||||||||||||| || ||  | ||||| |||   ||||| |||| || ||| ||     
gtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtctttattttttcaattggttttgtagGATCATCAGAGCCTTCTTAGTGGAGGAGCAGAAAATTGTGAAGAAGGTTTTGAAGATTCAGAAGGCTAAGGAAAAGCAAGCCTCAAAGAGCTGAGGTGAA----

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S200_25V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------gtgaccattctttcgcaactcatgcccgtccattgaaatgattaatggtgatactaa------gtcacc-----tgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAA---GGCCTCCAAGAACTAGGCGATATAG
               |     | | |      |  |     ||   ||| ||| || |   ||  | ||||      || | |     ||   |   ||| || ||||| || ||| | || ||||| |||||||||||||||||||||||||||||||| ||  | ||||| ||   |||  | |||| | |  |   |   
ttacatgtattgttatagttgtgcatgtttgccctagctgtgtgacttggaatcatcatctgtatttctaataaatcgtgatcaattttgtccgatgcagCATTATCCGAGCTTTTCTAGTTGAGGAACAGAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAGTCAAAGGAGAAATTGGCTGCTAAGACCCAATCCTAA---

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S76_47V6.1 (Physcomitrella patens), 3'ss of exon 3
---------------------gtgaccattctttcgcaactcatgcccgtccattgaaatgattaatggtgatactaa-----gtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAA---GGCCTCCAAGAACTAGGCGATATAG
                      |||  |   |  | | ||       |||  | |    |   |      ||  ||||     |  ||   | ||| |||| ||||| || || ||  | |||||||||||||| ||||| ||||||||| ||||||| || ||  ||||||| ||   |||  |||||    |  |   |   
gaaatattgtattccatttaattgattacagtgccaccacat-cattcgtttaatatcgtttctggatcagaccctaacgtatggaactgtcgtgtttcagCATCATTCGAGCATTCCTTGTCGAGGAGCAGAAAATCGTAAAGAAGGTTCTGAAGATTCAGAAGTCCAAGGAGAAATTGGCTGCCAAGGCTCAATCTTAA---

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S39_344V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------gtgaccattctttcgcaactcatgcccgtccat--tgaaatgattaatggtgatactaagtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAG--GCCTCCAAGAACTAGGCGATATAG
                        | ||  |||| | |          | |  |||  |   || ||   | |   | || |  ||  |  || |  ||| ||||| || || ||  | ||||||||||||||||| |||||||| ||  |||||||||| ||  | ||||| ||   | || | | ||||  |   ||   
attagtcattgtctgatttctttttaacagttctgttgtgttggccttctgggcatgcttggatcatgttttgcatttctgaaccaagtaaattttgcagCATCATTCGCGCTTTCCTTGTCGAGGAGCAGAAGATTGTGAAGAAAGTACTGAAGATCCAGAAGTCAAAGGAGAAATTGGCTGCTAAAACTCAGTCTTAA--

upper sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S2_242V6.1 (Physcomitrella patens), 3'ss of exon 3
------------gtgaccatt--ctttcgcaactcatgcccgtccattgaaa-tgattaatggtgatac----------taagtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAA--GGCCTCCAAGAACTAGGCGATATAG
             |||   ||   ||  | | || ||     || ||  ||  |||    ||||  ||           |||  |   |   | |  ||| || ||||  || ||  |  ||||||| |||||||| |||||||||||| | |||||||||||| | ||||| ||  |||  | ||     ||||   |   
ataaaagataacatgaatgttagtttatggatcttatcattttcaatcaaaggtgaaatttggttgtatctcttattcttaaaccgaatatgttttgcagCATTATCCAGGCTTTCCTCATCGAGGAACAGAAGATTGTGAAGAAGGTTCTAAAGATCCAAAAATCAAAGGAGAATTGGCTGCTAAAGCTCAGGCTTAAG--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60394221|gb|DN227091.1|DN227091
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|31612238|gb|CD568860.1|CD568860
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|31909205|gb|CD650802.1|CD650802
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|166462779|gb|EG199627.1|EG199627
EST:     GTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211530948|gb|FL194461.1|FL194461
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211530949|gb|FL194462.1|FL194462
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|6031638|gb|AI668539.2|AI668539
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|113795390|gb|DW911723.1|DW911723
EST:     GGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211336153|gb|FL024907.1|FL024907
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|40337269|gb|CK371339.1|CK371339
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|9952149|gb|BE638732.1|BE638732
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGA
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGA
EST: gi|15589577|gb|BI674193.1|BI674193
EST:     GTGAATCGTCCATACGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTCAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|18177402|gb|BM378612.1|BM378612
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211336147|gb|FL024901.1|FL024901
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|60396487|gb|DN229356.1|DN229356
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211093531|gb|FL210138.1|FL210138
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|60399809|gb|DN232619.1|DN232619
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|13558941|gb|BG550296.1|BG550296
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211440905|gb|FL024919.1|FL024919
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|28910208|gb|CB331322.1|CB331322
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|31250297|gb|CD219321.1|CD219321
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|5398743|gb|AI812208.1|AI812208
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211440908|gb|FL024922.1|FL024922
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTCAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|60352744|gb|DN219717.1|DN219717
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|5124370|gb|AI746106.1|AI746106
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|31909207|gb|CD650803.1|CD650803
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|113810262|gb|DW932535.1|DW932535
EST:     GTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|5439254|gb|AI820175.1|AI820175
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|60397292|gb|DN230108.1|DN230108
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211440906|gb|FL024920.1|FL024920
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTCAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|16378357|gb|BI992402.1|BI992402
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211440895|gb|FL024909.1|FL024909
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|40336063|gb|CK370133.1|CK370133
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|45846863|gb|CN070806.1|CN070806
EST:     GTGAATCGTCCATACGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTATTTGGTCGAGGAGCAGAAGATCGTCAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211443031|gb|FL024931.1|FL024931
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTCAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|60342507|gb|DN209480.1|DN209480
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|61119197|gb|DN560158.1|DN560158
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|28568995|gb|CB280870.1|CB280870
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211443025|gb|FL024925.1|FL024925
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211530950|gb|FL194463.1|FL194463
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211283035|gb|FL433223.1|FL433223
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|78027039|gb|DV495426.1|DV495426
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211068058|gb|FL377947.1|FL377947
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
EST: gi|211443023|gb|FL024923.1|FL024923
EST:     GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT
genomic: GTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtgaccattc ... catgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcccgtccattgaaatgattaatggtgatactaagtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAGGCCTCCAAGAACTAGGCGATATAG
                   gattaat  putative branch site (score: 3)
           attgaaatgattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgaccattctttcgcaactcatgcccgtccattgaaatgattaatggtgatactaagtcacctgcatgtctcagGATCATCCGTGCCTTTTTGGTCGAGGAGCAGAAGATCGTGAAGAAGGTTTTGAAGATCCAAAAAACCAAGGATAAGGCCTCCAAGAACTAGGCGATATAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC