1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caactcgttctcaagaaaagactgccaatatctcacaacatactgtgggggaattaacacattttactccctgacttaccattttcatttcattctacagTTCAGGGAAGCTGCAATGTCCAAGGATGATACGGAATTACTAAGGGTCATGGCTAACTACG
species | Zea mays |
transcript | GRMZM2G032293_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tgggggaattaacacattttactccctgacttaccattttcatttcattctacagTTCAGGGAAGCTGCAATGTCCAAGGATGATACGGAATTACTAAGGGTCATGGCTAACTACG
gacttac putative branch site (score: 264)
ttttcatttcattct putative PPT
aattaacacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caactcgttctcaagaaaagactgccaatatctcacaacatactgtgggggaattaacacattttactccctgacttaccattttcatttcattctacagTTCAGGGAAGCTGCAATGTCCAAGGATGATACGGAATTACTAAGGGTCATGGCTAACTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - aagaaaa
- - - - - - - - - - actgcca
- - - - - - - - - - - - - - - - - -caacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - taacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcatt