Sequence
atgc intronic sequence ATGC exonic sequencegtaactctaggttcctttggctaacctagatatcttttttgttacaaatgtccctctcattgaaaatgttctccaaacaatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTGTCCCCAAGATATAGTAGGGTAATATATCAGATAGGCAGGCCCCATACAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G031802_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g28340.1 (Oryza sativa), 3'ss of exon 5
gtaactctaggttcctttggctaacctagatatctt-ttttgttacaaatgtccctctc-attgaaaatgttctccaaacaatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTGTCCCCAAGATATAGTAGGGTAATAT-----ATCAGATAGGCAGGCCCCATACAC
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------gtatttgacttggttttaccttatcatttcattctgctactattgttcctttccattgacta----ctccaaacaatt-tgcagCTGGAAGAACAATGTGAAGCTGGAGCTACCAGCCTGAGCTCATTTTTCAT----CCAAGATAGGCTAGGTAAAACTTGTTAAATAGATAGAAAGGCATGATACA-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7136004|gb|AW498376.1|AW498376EST: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAG CTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
genomic: ATAGTGCAAACTCTGTTGTATGCTGACTTCTTCTTTTATTACATAATGAGgtaactctag ... aatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttttttgttacaaatgtccctctcattgaaaatgttctccaaacaatggtacagCTGGAAGAACAATGTGAAGCTAGAGCTGCCAGCTTAAGGTTGCTGCTCCTGTCCCCAAGATATAGTAGGGTAATATATCAGATAGGCAGGCCCCATACAC
attgaaaat TA-rich tract