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gtaagtagagagggattgtgcagcattgtttatggcacttgagtggagtgcctttctgaccaggggtttctttgctttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTTGCATCCTTCAATGAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACC
species | Zea mays |
transcript | GRMZM2G030422_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTEST: gi|18655046|gb|BM499851.1|BM499851
genomic: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
EST: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTGGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTEST: gi|18662061|gb|BM501725.1|BM501725
genomic: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCT
EST: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTEST: gi|22490728|gb|BU050651.1|BU050651
genomic: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
EST: GGCTCTTGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTEST: gi|71766923|gb|DR964860.1|DR964860
genomic: GGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
EST: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTEST: gi|18662063|gb|BM501726.1|BM501726
genomic: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
EST: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTEST: gi|32928255|gb|CF033067.1|CF033067
genomic: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
EST: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTEST: gi|18655047|gb|BM499852.1|BM499852
genomic: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
EST: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAA GCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
genomic: AAGATATTCTTTGAGATCCGGAAGCAGAAGTATCTGGAGGCTCTTGATAAgtaagtagag ... ttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTT
atggcacttgagtggagtgcctttctgaccaggggtttctttgctttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTTGCATCCTTCAATGAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACC
ttctgac putative branch site (score: 643)
tttctttgctttcat putative PPT
tttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagagagggattgtgcagcattgtttatggcacttgagtggagtgcctttctgaccaggggtttctttgctttcatatcagGCATGATCGGTCAAAGGCTGTTGAAATCTTGGTCAAGGACCTTAAGGTCTTTGCATCCTTCAATGAGGAGTTGTTCAAGGAGATCACACAGCTTCTAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA