1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtctgctgttaccattccaatcattgaaaaattcaattgcagagaggattttgacatacatttctgtaaaatattgtgaattagctttacctatggcatctgtaatgattgttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCATCTGTTGTCAAGGAAAGCTTCTCGAAAATTGATACCTCAAAAGATTCTG
species | Zea mays |
transcript | GRMZM2G030312_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|50323998|gb|CO519124.1|CO519124
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|89758965|gb|DY687943.1|DY687943
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|94478496|gb|EB707454.1|EB707454
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|28930930|gb|CB334291.1|CB334291
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|71766863|gb|DR964800.1|DR964800
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|148933324|gb|EC876981.2|EC876981
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: CAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|148938639|gb|EC882972.2|EC882972
genomic: CAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|78116030|gb|DV534418.1|DV534418
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|148995403|gb|EE034608.2|EE034608
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|29129982|gb|CB380686.1|CB380686
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|101382862|gb|EB813485.1|EB813485
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|94478060|gb|EB707018.1|EB707018
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211007163|gb|FL335897.1|FL335897
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTEST: gi|71770780|gb|DR968717.1|DR968717
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTT
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|89760660|gb|DY688984.1|DY688984
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211117480|gb|FL364799.1|FL364799
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACATTTTGGCTAGGGCATCAEST: gi|76926865|gb|DV171021.1|DV171021
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|101387368|gb|EB815700.1|EB815700
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|71439951|gb|DR821001.1|DR821001
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211393521|gb|FL317897.1|FL317897
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAA-TATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGEST: gi|91873051|gb|EB403008.1|EB403008
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAG
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|88757877|gb|DY542018.1|DY542018
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211092010|gb|FL367302.1|FL367302
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|148995402|gb|EE034607.2|EE034607
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211324643|gb|FL342466.1|FL342466
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211025812|gb|FL325341.1|FL325341
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211125338|gb|FL355515.1|FL355515
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTTAGAGCCTGCTAGAEST: gi|71757784|gb|DR955721.1|DR955721
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|71434759|gb|DR815809.1|DR815809
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|28873855|gb|CB329788.1|CB329788
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|211470275|gb|FL336875.1|FL336875
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|78075537|gb|DV503971.1|DV503971
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|149063793|gb|EE286381.2|EE286381
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|89251989|gb|DY623775.1|DY623775
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|101395854|gb|EB819854.1|EB819854
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCAEST: gi|76934354|gb|DV173837.1|DV173837
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
EST: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAG AACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
genomic: TTGCTCGGACAAAACGTGAATCTGAGAACTCCAAAAAATATGCAGTACAGgtctgctgtt ... gttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCA
gtaaaatattgtgaattagctttacctatggcatctgtaatgattgttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCATCTGTTGTCAAGGAAAGCTTCTCGAAAATTGATACCTCAAAAGATTCTG
taatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgctgttaccattccaatcattgaaaaattcaattgcagagaggattttgacatacatttctgtaaaatattgtgaattagctttacctatggcatctgtaatgattgttcgtgcagAACTTCTCTAAGAGCCTGCTAGATGTTGCTGACAATTTGGCTAGGGCATCATCTGTTGTCAAGGAAAGCTTCTCGAAAATTGATACCTCAAAAGATTCTG
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