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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcatctgaatccacaacacaaggatgccaaaaactcaattacaatatgctttctatattagattcttaggatctgattgtgtgcttgtaatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCTGGCTTCAAGGTCCAAATCCGGCAGTTGGGACCTGGAATGATTCAGCAA

Basic information

species Zea mays
transcript GRMZM2G028218_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028218_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G10150.2 (Glycine max), 3'ss of exon 3
--gtaggtcatctgaatccacaacacaaggatgccaaaaactcaattacaatatgctttctatattagattcttaggatctgattgtgtgcttgtaatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCTGGCTTCAAGGTCCAAATCCGGCAGTTGGGACCTGGAATGATTCAGCAA
   ||  ||  | | ||  |||| |  |   |           |||        | ||   | ||  ||||   |     || ||||  | |||| |   | ||| |||||||| |||||||| ||||||  || ||||||||||||||||||  ||||  | |||||    ||  | ||  | || ||    ||||||||||| 
gattatttctccagcatagacaaaaatattttattttctgggtaatcgttgctggtttcacaaatgggatttaca----ttggttgt-cgtttgtgaatttacagCAAGGGTTCTAAGTCTGGTGCTTCGATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACATCTTGGCCCATCCATGATTCAGCAG

upper sequence: GRMZM2G028218_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G17930.1 (Glycine max), 3'ss of exon 3
--gtaggtcatctgaatccacaacacaaggatgccaaaaactcaattacaatatgctttctatattagattcttaggatctgattgtgtgcttgtaatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCTGGCTTCAAGGTCCAAATCCGGCAGTTGGGACCTGGAATGATTCAGCAA
   |   | |  | || |    ||   |   |        |  ||||      || ||   | ||  ||||   |     ||||||| ||  ||| |     |||||||||||| |||||||| ||||||  || ||||||||||||||||||  ||||  | |||||    ||  | ||  | || ||    ||||||||||| 
catttcattaattcaaacattgactagattttattgttcgcgtaattgttgcttgtttcacaaatgggatttcca----ttgattgt-tgtctgtgaattctcagTAAGGGTTCTAAGTCTGGTGCTTCGATGAAGTGTGCTGGTTGTCAAGGAACTGGTATGAAGGTTTCTATAAGACATCTTGGCCCGTCCATGATTCAGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40336876|gb|CK370946.1|CK370946
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|67030348|gb|CO459097.1|CO459097
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|31360427|gb|CD444784.1|CD444784
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|5566927|gb|AI881838.1|AI881838
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|211088782|gb|FK991008.1|FK991008
EST:     CAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTNCCA-GTGCAATGG                         TAAGGGTTCCAAGTTTGGAGCT
genomic: CAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCT-CCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCT
EST: gi|22521136|gb|BU079947.1|BU079947
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTT
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTT
EST: gi|9743001|gb|BE519149.1|BE519149
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|211531690|gb|FK990937.1|FK990937
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTTTGGAGCTTTCGTCGAGGTTGTG-TGGGGTTGGTCAA
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTT-CGTCGAGGT-GTGCTGG--TTG-TCAA
EST: gi|67035410|gb|CO463943.1|CO463943
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|211531686|gb|FK990933.1|FK990933
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCNAGTGCAATGG                         TAAGGGTTCCAAGTTTTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTT
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCT-GGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTT
EST: gi|51592714|gb|CV071860.1|CV071860
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|5268675|gb|AI770639.1|AI770639
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|32845319|gb|CD985000.1|CD985000
EST:     TCAAAAAAGCTCTCTCTGTCCCGCAATGTCCTTTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|87155560|gb|DY400349.1|DY400349
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|28361755|gb|CB240111.1|CB240111
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|26559272|gb|CA831507.1|CA831507
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|211091233|gb|FK991021.1|FK991021
EST:     CAAAGAAGCTCTCTCTGTCCCCGCA-TGTCCTCTGCTCCA-GTGCAATGG                         TAAGGGTTCCAAGTTTGGAGCTTCCTCGAGGGG-GCTGGGTGTCAAGGTTC
genomic: CAAAGAAGCTCTCTCTGTCCC-GCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|67038376|gb|CO464706.1|CO464706
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|7162265|gb|AW519872.1|AW519872
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|211534686|gb|FK990945.1|FK990945
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTTTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|5268935|gb|AI770899.1|AI770899
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|28361546|gb|CB239902.1|CB239902
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|5555500|gb|AI881451.1|AI881451
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|32836749|gb|CD976427.1|CD976427
EST:     TCAAAAAAGCTCTCTCTGTCCCGCAATGTCCTTTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
EST: gi|8368444|gb|BE051389.1|BE051389
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAG
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAG
EST: gi|211540708|gb|FK990973.1|FK990973
EST:     TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGG                         TAAGGGTTCCAAGTTTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC
genomic: TCAAAGAAGCTCTCTCTGTCCCGCAATGTCCTCTGCTCCAAGTGCAATGGgtaggtcatc ... aatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgctttctatattagattcttaggatctgattgtgtgcttgtaatcgtgcagTAAGGGTTCCAAGTCTGGAGCTTCGTCGAGGTGTGCTGGTTGTCAAGGTTCTGGCTTCAAGGTCCAAATCCGGCAGTTGGGACCTGGAATGATTCAGCAA
                           atctgat  putative branch site (score: 4)
      tttctatattagatt  TA-rich tract