Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

Basic information

species Zea mays
transcript GRMZM2G022619_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g49030.1 (Oryza sativa), 3'ss of exon 3
gccagagctgg-tcgaggatggctt--tgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
|  |    ||| | |   |  |  |  ||  || | | |     | |   |    ||||  |   || || | ||    || |||   ||   ||| ||||||||||| ||||| ||||| || || |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||| ||||| ||||
gaaaagattggcttgctaagagtctagtgtgatactacatatcttggagttgaatagttaaaacagtgcaaccct---tctaaacattctgattgtatctcagATCTTTGAGCGTAACCCTACAACGATCAAGAACTACGGCATCTGGCTGCGTTACCAGAGCAGAACAGGTTACCACAACATGTACAAGGAATACCGTGACA

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: EDP09481 (Chlamydomonas reinhardtii), 3'ss of exon 3
gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
||      ||    |   || ||     |  |   |  |    |    ||              || || |  |  |    ||| |||       | ||||||||||||||||| || |||     ||||||||||||||||||| | || ||||||    | |||||    ||||||||||||||||||||||||||| 
gcgccgcgtgccacatcctgtctcctgcacgcatgacgcttccgcctgccctgcccgcgccaacccgccgcatcctcgcccctgccttacgcacgcgcagATCTTCGAGCGCAAGCCCACCCTGGCCAAGAACTACGGCATCTGGGTTCGCTACCAGTCGCGCACGGGCGTGCACAACATGTACAAGGAGTACCGCGACG

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S74_193V6.2 (Physcomitrella patens), 3'ss of exon 3
----------gccagagctggtcgaggatggctttgcaa---tcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttct-cagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
            | |  ||    |   | |   ||| ||   |||||| |||    |   |  ||||         |   | |    |    | ||| |  || ||| || ||||| || |||    |||| ||||| ||||||||||| || |||||| |||| || |||||  |||| ||||||||||||||||||||||            
ttcaatttcgaaccgttctcagtgtatacgctcttgaaaccatcccaatgtcgg--gaaattataagcagagacaattgtcgttgaatatgaatctgaccagACGTTCCTGCAGATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGG------------

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S44_13V6.1 (Physcomitrella patens), 3'ss of exon 3
gccagagctggtcgaggatg-gctttgcaatcccaaagtcac--ttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtt--tctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
   | |   || | | |    | || |  | || ||||  |   ||| |  || ||| | |     ||    | ||   || |||   | || ||    |  ||||| || |||    |||| |||||||||||||||||||| || ||| || |||| || ||  | || || |||||||||||||||||||| ||||| ||  
--gacaaacgggcaatgccacgtttcgttaacctaaagagagcattggttaccgaaggt-tgcacatcgg--tgtgtcactgaacactcctgttgcccattccagATTTTTGAGAAGTACCCTACCACCATCAAGAACTACGGTATTTGGGTGAGGTATCAAAGTCGTACCGGATACCACAACATGTACAAGGAATACCGTGATC

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S56_243V6.3 (Physcomitrella patens), 3'ss of exon 3
-gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
 |  | |  || | ||||  |   ||    |  ||| || | |  |   | | |     |  |  | |  |||  | || |  | | ||        |||||| || |||    | || ||||||||||||||||| || |||||| |||| || |||||| |||| || |||||||||||||||||||||||||| ||| 
agataca-ttgtttgagggcgaaattatgttaacaatgttaatcatgggcttgaaagtgacgttacgaattctattactaatgtagtttttgaaccttcagATTTTTGAGAAGTATCCCACCACCATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGCCGGACTGGCTACCACAACATGTACAAGGAGTACCGTGACC

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S74_193V6.1 (Physcomitrella patens), 3'ss of exon 3
gccagagctggtcgaggatggctttgcaa---tcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttct-cagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
  | |  ||    |   | |   ||| ||   |||||| |||    |   |  ||||         |   | |    |    | ||| |  || ||| || ||||| || |||    |||| ||||| ||||||||||| || |||||| |||| || |||||  |||| |||||||||||||||||||||||||| || ||| 
--ccgttctcagtgtatacgctcttgaaaccatcccaatgtcgg--gaaattataagcagagacaattgtcgttgaatatgaatctgaccagacgttcctgcagATTTTTGAGAAGTACCCTACCACTATCAAGAACTATGGTATCTGGGTGCGTTATCAGAGTCGGACCGGGTACCACAACATGTACAAGGAGTATCGTGACC

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S5_178V6.1 (Physcomitrella patens), 3'ss of exon 3
---gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtt-tctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
    | ||      |   ||  | ||     || |       |   | | |          |       |    || | || ||    |     ||| | |||||| || |||    |||| ||||| |||||||| || || |||||| |||| || |||||  | || || |||||||||||||||||||||||||| ||| 
atcactagcatattttatgggagactc----attcagcgacaaacggatgtagaggaaatgagccagataatcatgatactgaatgacccaatcgttgtttcagATTTTTGAGAAGTACCCTACCACTATCAAGAATTATGGTATCTGGGTGCGTTATCAGAGTCGAACTGGCTACCACAACATGTACAAGGAGTACCGTGACC

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S184_111V6.1 (Physcomitrella patens), 3'ss of exon 3
gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagtt--ctatttgtccacctctgctccttaactggcttgatgtttct--cagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
   || |   ||  |||||    | | |||||  |  |       ||   | | ||     ||| ||||  |    |  | |    ||||| ||    |  ||||||||||||    | ||||| ||||||||||||||||| || ||| |||||||||||||| | || || |||||||||||||||||||| ||||| ||  
---agtgggcgttaaggata-tgtgggaatccagagattttggagtcggttcacttgatggtttatccaatttcattgttgacaatgcttgttgcgcatgccagATCTTCGAGAAGTATCCAACTACCATCAAGAACTACGGTATATGGGTGCGGTACCAGAGCCGAACCGGCTACCACAACATGTACAAGGAATACCGTGATC

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: PP1S101_218V6.1 (Physcomitrella patens), 3'ss of exon 3
gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttc-----tcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
 |     |||   |   || ||  ||||        |  ||    |     | |  |    ||||||  |  |    ||||  || |   ||||||     ||||||||| |||    | ||||||||||||||||||||||| |||||| |||| || || ||| | || || |||||||| ||||||||||||||||| ||  
-cggtctctgagggtatatagcaatgcagatattttgatacagcctacttcagg--cggagtgtccaatttcgaatattaa--ggatgtctgtttcgcggttcagATCTTTGAGAAGTATCCAACCACCATCAAGAACTACGGGATCTGGGTGCGATATCAAAGCCGAACCGGCTACCACAATATGTACAAGGAGTACCGTGATC

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ38689 (Selaginella moellendorffii), 3'ss of exon 3
gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
                                 |||||   || || | ||   || | |    ||      |         |||      ||  | ||||| ||||||   ||||| ||||| ||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
-------------------------------gtaaagttctttctttttctttcttttctcgagccttacaagtgagaactttggaacttcgtgacacagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

upper sequence: GRMZM2G022619_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ31458 (Selaginella moellendorffii), 3'ss of exon 3
gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
                    |    |   |  |    ||  |  |||  | | | ||||    | ||  |  |  | ||      |||  ||   | ||||| ||||||   ||||| ||||| ||||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
--------------------gtaaagttctttctttttctttctttcctcgatgctctagccttacaagtgagaactttgg--aacttcgtga--cacagATTTTCGAGAAGAACCCGACCACGATCAAGAACTATGGCATCTGGGTGAGGTACCAGAGCCGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211391848|gb|FL357109.1|FL357109
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60350514|gb|DN217487.1|DN217487
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211264645|gb|FL311738.1|FL311738
EST:     ACCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60354807|gb|DN221780.1|DN221780
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211244959|gb|FL310181.1|FL310181
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCTCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|148951900|gb|EC897676.2|EC897676
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211267191|gb|FL317307.1|FL317307
EST:     C-CTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60341926|gb|DN208899.1|DN208899
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60344089|gb|DN211062.1|DN211062
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211383534|gb|FL339776.1|FL339776
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|149005545|gb|EE040104.2|EE040104
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|149004923|gb|EE039435.2|EE039435
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|32910826|gb|CF015638.1|CF015638
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAAATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211245829|gb|FL313149.1|FL313149
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211501247|gb|FL361466.1|FL361466
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60395466|gb|DN228336.1|DN228336
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211098619|gb|FL331618.1|FL331618
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211491892|gb|FL325731.1|FL325731
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211475067|gb|FL327991.1|FL327991
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|67018006|gb|CO446755.1|CO446755
EST:     AGCTGAAGAAGGTGAATAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|9952496|gb|BE639079.1|BE639079
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAAATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211444774|gb|FL343517.1|FL343517
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|78120742|gb|DV539126.1|DV539126
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|15590420|gb|BI675036.1|BI675036
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|116814940|gb|EC857568.1|EC857568
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|148971242|gb|EE022103.2|EE022103
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|9743058|gb|BE519206.1|BE519206
EST:     CAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: CAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|71432705|gb|DR813755.1|DR813755
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211206086|gb|FL354168.1|FL354168
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|9952208|gb|BE638791.1|BE638791
EST:     GAAGAGCAATGGCCAAATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: GAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211395960|gb|FL307395.1|FL307395
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211444267|gb|FL309575.1|FL309575
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|15554251|gb|BI644249.1|BI644249
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|9743059|gb|BE519207.1|BE519207
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211049737|gb|FL339089.1|FL339089
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|31359807|gb|CD444164.1|CD444164
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60399622|gb|DN232432.1|DN232432
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211457783|gb|FL343026.1|FL343026
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|78120743|gb|DV539127.1|DV539127
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|15499567|gb|BI596080.1|BI596080
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|8666072|gb|BE186888.1|BE186888
EST:     ATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: ATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211205133|gb|FL308047.1|FL308047
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211263228|gb|FL358742.1|FL358742
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211134145|gb|FL319310.1|FL319310
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|148954947|gb|EC900439.2|EC900439
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211335398|gb|FL223856.1|FL223856
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|149005544|gb|EE040103.2|EE040103
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211338053|gb|FL354247.1|FL354247
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211230857|gb|FL333968.1|FL333968
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211281939|gb|FL354668.1|FL354668
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|78108907|gb|DV527324.1|DV527324
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|27575944|gb|CA998638.1|CA998638
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60358429|gb|DN225402.1|DN225402
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211043931|gb|FL341752.1|FL341752
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|211374878|gb|FL313289.1|FL313289
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCTACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|30087074|gb|CB885282.1|CB885282
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|78108908|gb|DV527325.1|DV527325
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
EST: gi|60341146|gb|DN208119.1|DN208119
EST:     AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAG                         ATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG
genomic: AGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 794

GTACTTCCTGAGAAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 847

GTACTTCCTGAGAAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 737

GTACTTCCTGAGAAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 455

GTACTTCCTGAGAAAGCTGAAGAAGGTGAAGAAGAGCAATGGCCAGATGCTCGCCATCAACGAGgtacaaccaa ... tgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA
                                             tgtttctc  CT-rich tract
         ttctattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gccagagctggtcgaggatggctttgcaatcccaaagtcacttgttctcctaagttctatttgtccacctctgctccttaactggcttgatgtttctcagATCTTCGAGCGCAACCCAACCACCATCAAGAACTACGGCATCTGGCTGCGGTACCAGAGCAGGACGGGGTACCACAACATGTACAAGGAGTACCGCGACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - gctggtc
- - - - - - - - - - -ctttgca