1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgccgccatgcacgctgcacggcgcacgtgtcgctgcctcctccagcgcacgccaagcgtcgacacaggagcgcgctgacacgagctggtgtgggtgcagGTGAGGAGGTGGTGGAGTACATGGGCCCGCGGCCGCCGGTGGGTATCCACCGCTACGTGCTGGTGCTGTTCGAGCAGAAGACGCGCGTGCACGCGGAGGC
species | Zea mays |
transcript | GRMZM2G021614_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATAGTGATTAACATACCAGGAGGAACAGATGCTACTAAAG GTGAGGAGGTGGTGGAGTACATGGGCCCGCGGCCGCCGGTGGGCATCCACC
genomic: GATAGTGATTAACATACCAGGAGGAACAGATGCTACTAAAGgtgagttttt ... gtgggtgcagGTGAGGAGGTGGTGGAGTACATGGGCCCGCGGCCGCCGGTGGGTATCCACC
gcgcacgccaagcgtcgacacaggagcgcgctgacacgagctggtgtgggtgcagGTGAGGAGGTGGTGGAGTACATGGGCCCGCGGCCGCCGGTGGGTATCCACCGCTACGTGCTGGTGCTGTTCGAGCAGAAGACGCGCGTGCACGCGGAGGC
cgctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccgccatgcacgctgcacggcgcacgtgtcgctgcctcctccagcgcacgccaagcgtcgacacaggagcgcgctgacacgagctggtgtgggtgcagGTGAGGAGGTGGTGGAGTACATGGGCCCGCGGCCGCCGGTGGGTATCCACCGCTACGTGCTGGTGCTGTTCGAGCAGAAGACGCGCGTGCACGCGGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
tgccgcc
- - - - tgcacgc
- - - - - - - - gcacggc
- - - - - - - - - - - -gcacgtg
- - - - - - - - - - - - - - - -cgctgcc
- - - - - - - - - - - - - - - - - - - - ctccagc
- - - - - - - - - - - - - - - - - - - - - - - -gcacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caggagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctggt