1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagaacatcatgtagaaactattcatcaagcacatatgcatccattcctttatttggctgactttggtcttcatttacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG
species | Zea mays |
transcript | GRMZM2G018837_T04 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTA GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCEST: gi|149000276|gb|EE037432.2|EE037432
genomic: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTAgtaagaacat ... tacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
EST: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTA GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCEST: gi|149075355|gb|EE163864.2|EE163864
genomic: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTAgtaagaacat ... tacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
EST: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTA GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCEST: gi|149014700|gb|EE044372.2|EE044372
genomic: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTAgtaagaacat ... tacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
EST: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTA GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCEST: gi|76910443|gb|DV163876.1|DV163876
genomic: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTAgtaagaacat ... tacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
EST: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTA GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCEST: gi|148956501|gb|EC902338.2|EC902338
genomic: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTAgtaagaacat ... tacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
EST: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTA GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCEST: gi|26557412|gb|CA829647.1|CA829647
genomic: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTAgtaagaacat ... tacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
EST: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTA GTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
genomic: ATAGTCTGCAGAGGCTCTGCTCATCATTGGAACCAATTCTTCGTAGAGTAgtaagaacat ... tacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATC
cacatatgcatccattcctttatttggctgactttggtcttcatttacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG
ggctgac putative branch site (score: 3)
tcttcattt putative PPT
tttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacatcatgtagaaactattcatcaagcacatatgcatccattcctttatttggctgactttggtcttcatttacttgatagGTCAGTGAAGAAGTGGAGCGCGCACTGGGCAAACTTGGCCCTGCAACAATCGGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG