1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtttgctcatggctcaaccgatttcctcaaccagagaatgctcattgttctgtggtctgcgatgatggtatgattatattgttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTGCTGAAGTTCAGCTGCCTATTGA
species | Zea mays |
transcript | GRMZM2G015902_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|76935876|gb|DV174501.1|DV174501
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|149014683|gb|EE044352.2|EE044352
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211001836|gb|FL114782.1|FL114782
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211001838|gb|FL114784.1|FL114784
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|71332986|gb|DR803518.1|DR803518
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|76018908|gb|DT946078.1|DT946078
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211469324|gb|FL299243.1|FL299243
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|20802771|gb|BQ293821.1|BQ293821
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: ACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAA-GGACAACTGGCATTEST: gi|211001837|gb|FL114783.1|FL114783
genomic: ACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211001833|gb|FL114779.1|FL114779
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|78116755|gb|DV535142.1|DV535142
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|91870478|gb|EB400898.1|EB400898
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|148960852|gb|EE011528.2|EE011528
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211469326|gb|FL299245.1|FL299245
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGEST: gi|71446263|gb|DR827313.1|DR827313
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAG
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|71437898|gb|DR818948.1|DR818948
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211466800|gb|FL299231.1|FL299231
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAA-AAGAACTCAGAGGAGAGCTEST: gi|211469331|gb|FL299250.1|FL299250
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211471856|gb|FL299263.1|FL299263
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTACACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCEST: gi|71770078|gb|DR968015.1|DR968015
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGC
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|71323571|gb|DR798454.1|DR798454
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTEST: gi|211469318|gb|FL299237.1|FL299237
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATT
EST: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAG GTAAAGAAGAAGAACT
genomic: AAGAGATGGACCATGTGGACGAGCTCTATACCGTGCCAGACCACCTCAAGgtttgctcat ... ttccttgcagGTAAAGAAGAAGAACT
aatgctcattgttctgtggtctgcgatgatggtatgattatattgttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTGCTGAAGTTCAGCTGCCTATTGA
ttgttcctt CT-rich tract
tatgattatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctcatggctcaaccgatttcctcaaccagagaatgctcattgttctgtggtctgcgatgatggtatgattatattgttccttgcagGTAAAGAAGAAGAACTCAGAGGAGAGCTCGACACAATGGACAACTGGCATTGCTGAAGTTCAGCTGCCTATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC