1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctcaagatatacttcacaaggctgtagtagatctcagtttgtacatcttcataaaagatatacttggcgttttatgctaactttgcttttcattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCTCAG
species | Zea mays |
transcript | GRMZM2G011575_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAG GTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCTEST: gi|71307834|gb|DR790138.1|DR790138
genomic: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAGgttatgtagt ... cattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCT
EST: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAG GTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCTEST: gi|29167999|gb|CB411259.1|CB411259
genomic: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAGgttatgtagt ... cattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCT
EST: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAG GTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCCGATTATGCATCTEST: gi|31358140|gb|CD442497.1|CD442497
genomic: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAGgttatgtagt ... cattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCT
EST: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAG GTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCTEST: gi|211502392|gb|FK960892.1|FK960892
genomic: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAGgttatgtagt ... cattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCT
EST: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAG GTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCEST: gi|148933022|gb|EE285909.2|EE285909
genomic: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAGgttatgtagt ... cattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATC
EST: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAG GTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCT
genomic: AAGCATTTCTCCAACTTCTGTTAAGTTCGACTAATGGGGACAACATTGAGgttatgtagt ... cattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCT
tcttcataaaagatatacttggcgttttatgctaactttgcttttcattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCTCAG
tgctaac putative branch site (score: 1)
ctttgcttttcatt CT-rich tract
ataaaagatatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaagatatacttcacaaggctgtagtagatctcagtttgtacatcttcataaaagatatacttggcgttttatgctaactttgcttttcattgttcagGTTCTAAAGCAGTCTGCTGTCGCTTACTTGAACGGATCTGATTATGCATCTCAG
- - - - - -cttcaca
- - - - - - - - - - gctgtag
- - - - - - - - - - - - - - - - - - - - gtacatc
- - - - - - - - - - - - - - - - - - - - - - - - -cataaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgctaa