1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...taaactgatagaactttagtacctttaagtttatatgcacgaagccagatgatgattcatatggtaaatccttcatgatgaggcgtgttgttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCCATATTTGTTGTACCGGAATGCTTCACAAGAAGTAAATGGAATTTGGTT
species | Zea mays |
transcript | GRMZM2G011173_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|19436293|gb|BM952703.1|BM952703
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTCCAACCTCEST: gi|89248124|gb|DY619910.1|DY619910
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|71419808|gb|DR804903.1|DR804903
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|71435432|gb|DR816482.1|DR816482
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|71320866|gb|DR797150.1|DR797150
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|76013659|gb|DT940829.1|DT940829
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|71313019|gb|DR793034.1|DR793034
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|211502577|gb|FL311927.1|FL311927
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|211145073|gb|FL314893.1|FL314893
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|67034610|gb|CO463160.1|CO463160
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|78091120|gb|DV519494.1|DV519494
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|74241849|gb|DT649763.1|DT649763
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|93016793|gb|EB642313.1|EB642313
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|71768256|gb|DR966193.1|DR966193
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|94477701|gb|EB706659.1|EB706659
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|101382184|gb|EB813148.1|EB813148
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCEST: gi|87153649|gb|DY398438.1|DY398438
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
EST: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTG ATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTCCAACCTC
genomic: GAACTCGCAGCCCAGATTCCAGTTCATTGTCATGAACAGGCGCAACACTGgtacgcacta ... ttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTC
cagatgatgattcatatggtaaatccttcatgatgaggcgtgttgttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCCATATTTGTTGTACCGGAATGCTTCACAAGAAGTAAATGGAATTTGGTT
ttgttctc CT-rich tract
attcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaactgatagaactttagtacctttaagtttatatgcacgaagccagatgatgattcatatggtaaatccttcatgatgaggcgtgttgttctcaacagATAATCTGGTGGAGGATCTCTTAAGTGATTTTGAATACGAACTTCAACCTCCATATTTGTTGTACCGGAATGCTTCACAAGAAGTAAATGGAATTTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - atgcacg
- - - - - - - - - - - - - - - - - - - - - - - - -tgatgat