1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cgcttaaaatgaaataagcatgtcgtttatgacatgtgaagaactgaagatgcacaacatgtttgttcatgaagcctgatatgggcttattataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCAAG
species | Zea mays |
transcript | GRMZM2G010596_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAAATCCCAACCATTTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCEST: gi|149096806|gb|EE182592.2|EE182592
genomic: GAAAATCCCAACCATT-GGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGC
EST: TGATAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|87155899|gb|DY400688.1|DY400688
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|149100426|gb|EE186501.2|EE186501
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|76014403|gb|DT941573.1|DT941573
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|149112325|gb|EE295216.2|EE295216
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: GGAAAATCCCACCCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGGTGCAACACCCACATCATGCCEST: gi|148963379|gb|EE014384.2|EE014384
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|50326184|gb|CO521310.1|CO521310
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|22542195|gb|BU092633.1|BU092633
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCEST: gi|149112326|gb|EE295217.2|EE295217
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGGACT-GTTAGGGATGCTGCAACACCC-CATCEST: gi|71762021|gb|DR959958.1|DR959958
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATG-ACTTGTTAGGGATGCTGCAACACCCACATC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|74234159|gb|DT642073.1|DT642073
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|89247322|gb|DY619108.1|DY619108
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|148986222|gb|EE029970.2|EE029970
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCEST: gi|76925026|gb|DV170254.1|DV170254
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|148949339|gb|EC894793.2|EC894793
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACEST: gi|148949338|gb|EC894792.2|EC894792
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGAC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|91869927|gb|EB400612.1|EB400612
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|91051986|gb|EB162404.1|EB162404
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAEST: gi|50331354|gb|CO526480.1|CO526480
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTA
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|71311050|gb|DR791837.1|DR791837
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|148981405|gb|EE027629.2|EE027629
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGAEST: gi|50326633|gb|CO521759.1|CO521759
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGA
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|50330324|gb|CO525450.1|CO525450
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|78114102|gb|DV532491.1|DV532491
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|211281935|gb|FL354664.1|FL354664
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|148986221|gb|EE029969.2|EE029969
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGGTGCAACACCCACATCATGCCEST: gi|71766836|gb|DR964773.1|DR964773
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|91049382|gb|EB159800.1|EB159800
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: GAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|71448702|gb|DR829752.1|DR829752
genomic: GAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCEST: gi|148981404|gb|EE027628.2|EE027628
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
EST: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAG GTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
genomic: TGAAAATCCCAACCATTGGCATTGGGGCTGGACCATTCTGTAGTGGCCAGgttcgtttgt ... tataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCC
gaagatgcacaacatgtttgttcatgaagcctgatatgggcttattataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCAAG
gcctgat putative branch site (score: 69)
ttattataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcttaaaatgaaataagcatgtcgtttatgacatgtgaagaactgaagatgcacaacatgtttgttcatgaagcctgatatgggcttattataatgcagGTCTTGGTGTACCATGACTTGTTAGGGATGCTGCAACACCCACATCATGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - aaatgaaa
- - - - - - - -aagcatg
- - - - - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - -aactgaa
- - - - - - - - - - - - - - - - - - - - - - - - gatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcctg