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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctaccccaacttgcttgacactaaaaagactatgttgttgttgttgttgttcatgttgatttcaacataccaagttattaatgctttcttgtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAG

Basic information

species Zea mays
transcript GRMZM2G003692_T05
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211527525|gb|FL409928.1|FL409928
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211174932|gb|FL421412.1|FL421412
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: gi|211455863|gb|FL399438.1|FL399438
EST:     GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG                         GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGGATACTA
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTG-ATACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttcatgttgatttcaacataccaagttattaatgctttcttgtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCAG
                              tattaat  putative branch site (score: 2)
                                      ctttcttgt  CT-rich tract
                          aagttattaat  TA-rich tract