1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctaccccaacttgcttgacactaaaaagactatgttgttgttgttgttgttcatgttgatttcaacataccaagttattaatgctttcttgtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCA
species | Zea mays |
transcript | GRMZM2G003692_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|211174932|gb|FL421412.1|FL421412
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|211280391|gb|FL376816.1|FL376816
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|211267130|gb|FL426696.1|FL426696
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|211126709|gb|FL428259.1|FL428259
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|211245303|gb|FL400469.1|FL400469
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|211070635|gb|FL369038.1|FL369038
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|32919174|gb|CF023986.1|CF023986
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATEST: gi|211455863|gb|FL399438.1|FL399438
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTAT
EST: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTG GGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGGATACTA
genomic: GTCGTGTGGATTACTGGAGCTAGCCGCGGGATTGgtcagcgtgc ... gtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTG-ATACTA
gttgttcatgttgatttcaacataccaagttattaatgctttcttgtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCA
tattaat putative branch site (score: 2)
ctttcttgt CT-rich tract
aagttattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaccccaacttgcttgacactaaaaagactatgttgttgttgttgttgttcatgttgatttcaacataccaagttattaatgctttcttgtaatttcagGGGAGGTTCTTGCAATGCACTTCGCAAATTTAGGAGCAAAGCTGATACTATCTGCACGTAACAAGGACGCGCTTGCGAGAGTGAAAAAAAACATCCTCA
- - - - - -tgcttga
- - - - - - - - - - - aaaaaga
- - - - - - - - - - - - - - - - tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caacata