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gtttgctgctatctcacagtgaatctcatggtgcaacctttggtaactatgggttagtaactattttctgtaatgttttgatctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGGATGGCACCGACCAAAAAGGAGCCACGCAAGAATATATTAAGAAAGAGA
species | Zea mays |
transcript | GRMZM2G014788_T01 |
intron # | 26 |
splice site | 3' |
intron type | U2 |
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|33092001|gb|CF051995.1|CF051995
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|211361549|gb|FL423686.1|FL423686
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|211041954|gb|FL378891.1|FL378891
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|60357426|gb|DN224399.1|DN224399
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATAACTTCTCTGGGTTCAGGEST: gi|32928505|gb|CF033317.1|CF033317
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|5608456|gb|AI902033.1|AI902033
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|33091614|gb|CF051608.1|CF051608
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|32848978|gb|CD988659.1|CD988659
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|32942753|gb|CF047572.1|CF047572
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|32908270|gb|CF013083.1|CF013083
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGTACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|32933415|gb|CF038227.1|CF038227
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|32908269|gb|CF013082.1|CF013082
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGTACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|60399625|gb|DN232435.1|DN232435
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|67041526|gb|CO467781.1|CO467781
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|211516406|gb|FL409520.1|FL409520
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|211413951|gb|FL082391.1|FL082391
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|211441921|gb|FL415411.1|FL415411
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGTCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGGTCAGGEST: gi|37383469|gb|CF628751.1|CF628751
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|6056869|gb|AW091274.1|AW091274
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCCCTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|6020513|gb|AW065441.1|AW065441
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|60346132|gb|DN213105.1|DN213105
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|32932418|gb|CF037230.1|CF037230
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCGGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGEST: gi|5819266|gb|AI987472.1|AI987472
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
EST: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAG GTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
genomic: CCGCTTATTGTTGGAGTTTCTGTGGTTGCACTGGTGATCAGTATGCCAAGgtttgctgct ... atctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGG
acctttggtaactatgggttagtaactattttctgtaatgttttgatctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGGATGGCACCGACCAAAAAGGAGCCACGCAAGAATATATTAAGAAAGAGA
ttagtaactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctgctatctcacagtgaatctcatggtgcaacctttggtaactatgggttagtaactattttctgtaatgttttgatctgtgcagGTTAAATGACTTATACCAGAGCGCTGTAGGGATGACTTCTCTGGGTTCAGGGATGGCACCGACCAAAAAGGAGCCACGCAAGAATATATTAAGAAAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA