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...ttttattctttgaattgtttctgtaataagaaactcgtatgcatctgtgttcaaatttgaataaattgctgatggttgctttaatttctttcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAGTTTGCTCTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTG
species | Zea mays |
transcript | GRMZM2G030422_T02 |
intron # | 25 |
splice site | 3' |
intron type | U2 |
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGAATCTTCCTCCAAATATCAG TCTGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|32908130|gb|CF012943.1|CF012943
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|19351107|gb|BM895639.1|BM895639
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|7162284|gb|AW519891.1|AW519891
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|83278414|gb|DV942422.1|DV942422
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCTGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|22473364|gb|BU037844.1|BU037844
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: GACTTCAGATGTCGGATTTTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAEST: gi|7227452|gb|AW566093.1|AW566093
genomic: GACTTCA-ATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTEST: gi|32865780|gb|CF005462.1|CF005462
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTT
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|5608394|gb|AI901971.1|AI901971
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: TTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|32935018|gb|CF039830.1|CF039830
genomic: TTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|37393773|gb|CF634152.1|CF634152
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|76010934|gb|DT938104.1|DT938104
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAEST: gi|32908128|gb|CF012941.1|CF012941
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
tgtgttcaaatttgaataaattgctgatggttgctttaatttctttcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAGTTTGCTCTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTG
ttgctttaatttcttt CT-rich tract
tcaaatttgaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttattctttgaattgtttctgtaataagaaactcgtatgcatctgtgttcaaatttgaataaattgctgatggttgctttaatttctttcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCAGTTTGCTCTAGGGCTGACTGATGGTGGTGTTTTTGTGTTGGAACCTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -tgtttct
- - - - - - - - - - - - -ataagaaa
- - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgcttt