1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtttgatgcctggccttagctgttagccggacgctcactgtgagtgaaataattctggtagtttgtagagtctaaactttgtggtttacgtatttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACCTCCCTCAGAAGCTACAGAACCTCATTGAAGAGCGCAGGGATGGACAAC
species | Zea mays |
transcript | GRMZM2G017654_T02 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAG GTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAEST: gi|16925145|gb|BM078213.1|BM078213
genomic: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGgtttgatgcc ... ttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGA
EST: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAG GTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACEST: gi|32850766|gb|CD990447.1|CD990447
genomic: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGgtttgatgcc ... ttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGAC
EST: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAG GTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACEST: gi|67019425|gb|CO448174.1|CO448174
genomic: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGgtttgatgcc ... ttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGAC
EST: TGACTC-TCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAG GTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACEST: gi|213179228|gb|FM184299.1|FM184299
genomic: TGAC-CATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGgtttgatgcc ... ttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGAC
EST: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAG GTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACEST: gi|67030562|gb|CO459311.1|CO459311
genomic: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGgtttgatgcc ... ttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGAC
EST: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAG GTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGAC
genomic: TTGACCATCGAGAAGCTATTGCCCGCTTGACTCTGCTGAAACTCATAAAGgtttgatgcc ... ttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGAC
ataattctggtagtttgtagagtctaaactttgtggtttacgtatttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACCTCCCTCAGAAGCTACAGAACCTCATTGAAGAGCGCAGGGATGGACAAC
gtctaaa putative branch site (score: 3)
tatttttttcc putative PPT
tttacgtattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatgcctggccttagctgttagccggacgctcactgtgagtgaaataattctggtagtttgtagagtctaaactttgtggtttacgtatttttttccagGTTGTCTATGAGCACCATCCTCGACCAAAACAGCTCATAGTAGAGAATGACCTCCCTCAGAAGCTACAGAACCTCATTGAAGAGCGCAGGGATGGACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA