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gtattcatggtggctttgtttttctttcattgcacagatagaagttaagtatgacttatttgctctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG
species | Zea mays |
transcript | GRMZM2G030422_T02 |
intron # | 22 |
splice site | 3' |
intron type | U2 |
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGNCTTGCCTTTEST: gi|211016174|gb|FL013378.1|FL013378
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211016178|gb|FL013382.1|FL013382
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211018955|gb|FL013387.1|FL013387
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211016172|gb|FL013376.1|FL013376
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|37422204|gb|CF648808.1|CF648808
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211016173|gb|FL013377.1|FL013377
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGNCTTGCCTTTEST: gi|211016170|gb|FL013374.1|FL013374
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211018956|gb|FL013388.1|FL013388
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211016176|gb|FL013380.1|FL013380
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|31360482|gb|CD444839.1|CD444839
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211016181|gb|FL013385.1|FL013385
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211016177|gb|FL013381.1|FL013381
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|211016179|gb|FL013383.1|FL013383
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|22473365|gb|BU037845.1|BU037845
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTEST: gi|76010934|gb|DT938104.1|DT938104
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
ttttctttcattgcacagatagaagttaagtatgacttatttgctctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG
cttatttgctcttt CT-rich tract
ttaagtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcatggtggctttgtttttctttcattgcacagatagaagttaagtatgacttatttgctctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTTTCAAATGTGCTAAATGTTTTAGTCTCGTCAGGAGCTGATGCCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT