1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtatggtattgtgccccttagtatcttactgccgtttgaagggcttgctccgctaaaagtcagcttactaacatctcggtctctcgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAGAGGTGATAAAGGATGCTTATGCTGTACCATCACTTGCCACTGCGGTTC
species | Zea mays |
transcript | GRMZM2G032049_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAEST: gi|14244317|gb|BG842294.2|BG842294
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAEST: gi|211443353|gb|FL038107.1|FL038107
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAEST: gi|211208862|gb|FL472063.1|FL472063
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAEST: gi|60396932|gb|DN229751.1|DN229751
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAEST: gi|211147648|gb|FL303726.1|FL303726
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAEST: gi|149100564|gb|EE186649.2|EE186649
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAEST: gi|211263407|gb|FL474907.1|FL474907
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
EST: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAG AATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
genomic: AGCCATTGAAGGTGGAAGTAAGATTATTCGAGAAATTGTTCATGTCAGAGgtatggtatt ... cgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAA
agggcttgctccgctaaaagtcagcttactaacatctcggtctctcgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAGAGGTGATAAAGGATGCTTATGCTGTACCATCACTTGCCACTGCGGTTC
tactaac putative branch site (score: 67)
tctctcgct putative PPT
taaaagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtattgtgccccttagtatcttactgccgtttgaagggcttgctccgctaaaagtcagcttactaacatctcggtctctcgctatacagAATCCTGCTGAATTGGAAGATTGGCTTGGCGATCTTAACCCACACTCGAAAGAGGTGATAAAGGATGCTTATGCTGTACCATCACTTGCCACTGCGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG