1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
gtgagatctgtttcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctttacataccataggtaaaaattttgtgtggtagattgttactaaattgctcaatttttctattcatcaatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTGATGACTAATGACACGACTGACAATAATCCTGAAGAAGCTGTTCACTGCT
species | Zea mays |
transcript | GRMZM2G030422_T02 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTGEST: gi|19058885|gb|BM737552.1|BM737552
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: CTGGTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTGEST: gi|19058659|gb|BM737326.1|BM737326
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAEST: gi|22520900|gb|BU079711.1|BU079711
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAA
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAEST: gi|31360482|gb|CD444839.1|CD444839
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAA
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAACCGCAAGTGTATCTCCCACACTATGGCAACCACCAAGTGGCATCTTGEST: gi|22473365|gb|BU037845.1|BU037845
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTGEST: gi|6095542|gb|AW120209.1|AW120209
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
EST: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAG GCAACCGCAAGTGTATCTCCCACACTATGGCAACCACCAAGTGGCATCTTG
genomic: CTGTTCATCTACTCTGGAAATGGCCACGCAGTGATCGGAATTCTGGAAAGgtgagatctg ... aatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTG
ttgtgtggtagattgttactaaattgctcaatttttctattcatcaatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTGATGACTAATGACACGACTGACAATAATCCTGAAGAAGCTGTTCACTGCT
tactaaa putative branch site (score: 225)
aatttttctattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatctgtttcttatgtacatatagatgtgcataaatagtgttcagatcgctcatcttctttacataccataggtaaaaattttgtgtggtagattgttactaaattgctcaatttttctattcatcaatcttatagGCAACCGCAAGTGTATCTCCCACTCTATGGCAACCACCAAGTGGCATCTTGATGACTAATGACACGACTGACAATAATCCTGAAGAAGCTGTTCACTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT