1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctcactagaaacattctgcagctgtttaactagatgctggtttctttcaaaagttgtggtctgtgtacatatagaagtcactgatgattcctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAACCGTGGTATATCGAGTGATACTTAAAGGAACTGATGGAGAG
species | Zea mays |
transcript | GRMZM5G868664_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAAEST: gi|32802619|gb|CD954855.1|CD954855
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCCGAGAATGGAACTGTAAEST: gi|211517263|gb|FK995258.1|FK995258
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCCGAGAATGGAACTGTAAEST: gi|211517262|gb|FK995257.1|FK995257
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAAKGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATEST: gi|32805037|gb|CD957273.1|CD957273
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTAT
EST: GTACCATGCCAACAGAATGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCCGAGAATGGAACTGTAAEST: gi|211517264|gb|FK995259.1|FK995259
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCCGAGAATGGAACTGTAAEST: gi|211517265|gb|FK995260.1|FK995260
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAAEST: gi|211449265|gb|FL470101.1|FL470101
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAAEST: gi|21389934|gb|BQ527983.1|BQ527983
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCCGAGAATGGAACTGTAAEST: gi|32788095|gb|CD940331.1|CD940331
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCCGAGAATGGAACTGTAAEST: gi|32795035|gb|CD947271.1|CD947271
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGTTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCCGAGAATGGAACTGTAAEST: gi|71332520|gb|DR803224.1|DR803224
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAAEST: gi|211449266|gb|FL470102.1|FL470102
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
EST: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAG GTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
genomic: GTACCATGCCAACAGAATGCTTAGCTTTTACGCACCAGgtgtgttctc ... ctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAA
ttcaaaagttgtggtctgtgtacatatagaagtcactgatgattcctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAACCGTGGTATATCGAGTGATACTTAAAGGAACTGATGGAGAG
cactgat putative branch site (score: 34)
ttcctat putative PPT
tacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcactagaaacattctgcagctgtttaactagatgctggtttctttcaaaagttgtggtctgtgtacatatagaagtcactgatgattcctatgttcagGTTGGTGTGGAGAAGTTCGTGATGTTATCTATTCTGAGAATGGAACTGTAACCGTGGTATATCGAGTGATACTTAAAGGAACTGATGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - -gcagctg
- - - - - - - - - - - - - - - - gatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat