1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggtcctacatttttcatcgttgcataaactcctatctgttcattatcaattatatcatcttagaacaaatttcttttggtactttgatttgctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCAGCGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCAT
species | Zea mays |
transcript | GRMZM5G833032_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAG ATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCEST: gi|37418407|gb|CF646872.1|CF646872
genomic: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAGgtattcctat ... gctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
EST: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAG ATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCEST: gi|211267584|gb|FK993692.1|FK993692
genomic: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAGgtattcctat ... gctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
EST: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAG ATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCEST: gi|50330402|gb|CO525528.1|CO525528
genomic: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAGgtattcctat ... gctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
EST: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAG ATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCEST: gi|37419739|gb|CF647554.1|CF647554
genomic: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAGgtattcctat ... gctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
EST: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAG ATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCEST: gi|149081532|gb|EE170668.2|EE170668
genomic: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAGgtattcctat ... gctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
EST: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAG ATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCEST: gi|74234805|gb|DT642719.1|DT642719
genomic: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAGgtattcctat ... gctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
EST: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAG ATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
genomic: GTGACTGGAAGAAGATAGAGGCTTTTGTTGGCTCCAAGACTGTCATCCAGgtattcctat ... gctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACC
tcaattatatcatcttagaacaaatttcttttggtactttgatttgctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCAGCGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCAT
ctttgat putative branch site (score: 11)
aacaaatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcctacatttttcatcgttgcataaactcctatctgttcattatcaattatatcatcttagaacaaatttcttttggtactttgatttgctgttgtagATTAGGAGCCATGCACAGAAGTACCTTTTGAAGGTTCAGAAAAATGGAACCAGCGAACATGTCCCACCTCCACGACCAAAGCGAAAAGCTGCCCATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC