1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgtgcaagatacaacactcatgttccttgttgcaaccttcattttaaaatcatttctgatacgtgacgccaaatccattagttgtcttgcctatctagatgattgatattgaagctttttttttttgcttcatcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTT-AATGGATACTACAATEST: gi|211188255|gb|FL327236.1|FL327236
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|149101643|gb|EE187775.2|EE187775
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|71767568|gb|DR965505.1|DR965505
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211285085|gb|FL334458.1|FL334458
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTANAGCTTATAGCCTCGACAAAAG CTATTTTCCATTTTGTTCATGAGGCTGNGACTATTTTAATGGATACTACNAEST: gi|29130241|gb|CB380945.1|CB380945
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTT-CCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAA
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211469576|gb|FL315154.1|FL315154
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|76293281|gb|DV032849.1|DV032849
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|71446633|gb|DR827683.1|DR827683
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211198069|gb|FL339164.1|FL339164
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCYTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCAYGAGGCTGTGACTATTTTAATGGAEST: gi|211346647|gb|FL306883.1|FL306883
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGA
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTEST: gi|211337668|gb|FL335756.1|FL335756
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACCAAEST: gi|71330641|gb|DR802092.1|DR802092
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTAC-AA
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211481369|gb|FL368104.1|FL368104
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACRAAEST: gi|211477296|gb|FL319649.1|FL319649
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTAC-AA
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTKAATGGATACTACAATEST: gi|211414919|gb|FL346511.1|FL346511
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|78091217|gb|DV519591.1|DV519591
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211507618|gb|FL326181.1|FL326181
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211231531|gb|FL255915.1|FL255915
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: CTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211231534|gb|FL255918.1|FL255918
genomic: CTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: TTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211456968|gb|FL307879.1|FL307879
genomic: TTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|50322421|gb|CO517547.1|CO517547
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211023229|gb|FL319670.1|FL319670
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211274143|gb|FL330839.1|FL330839
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|78114998|gb|DV533386.1|DV533386
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|78113447|gb|DV531839.1|DV531839
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|50334362|gb|CO529488.1|CO529488
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211274560|gb|FL349473.1|FL349473
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|37424619|gb|CF650042.1|CF650042
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211203269|gb|FL344215.1|FL344215
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTANTGGATACTACAATEST: gi|211195422|gb|FL326474.1|FL326474
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|71436743|gb|DR817793.1|DR817793
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATEST: gi|211228866|gb|FL338409.1|FL338409
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
EST: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAG CTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
genomic: ATTAGTGACGAAAAGTTTGAACGCTCTAGAGCTTATAGCCTCGACAAAAGgtttgtgcaa ... catcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAAT
cttgcctatctagatgattgatattgaagctttttttttttgcttcatcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG
gattgat putative branch site (score: 102)
ctttttttttttgctt putative PPT
atattgaagctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgcaagatacaacactcatgttccttgttgcaaccttcattttaaaatcatttctgatacgtgacgccaaatccattagttgtcttgcctatctagatgattgatattgaagctttttttttttgcttcatcttacagCTATTTCCATTTTGTTCATGAGGCTGTGACTATTTTAATGGATACTACAATACTATACTATAGAGTTCTTCCCTGGTTTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG