Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaactgcccatcgaacgtcgcaacgcgactgctccatcctctttgatccgattcattcccaactgttgctgcctttgttgttcccagGGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGAGATCCTAAATGAAAATTCACTACTGGATTTGACTTTGCTGGTTTCACAA

Basic information

species Zea mays
transcript GRMZM5G807327_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87154786|gb|DY399575.1|DY399575
EST:     AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGTGGCAAGAAG                         GGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGA
genomic: AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGTGGCAAGAAGgtatttaact ... ttgttcccagGGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGA
EST: gi|22545102|gb|BU097461.1|BU097461
EST:     AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGGGGCAAGAAG                         GGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGA
genomic: AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGTGGCAAGAAGgtatttaact ... ttgttcccagGGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGA
EST: gi|26455623|gb|CA827206.1|CA827206
EST:     AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGTGGCAAGAAA                         GGATCCGGTCTGTGAG
genomic: AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGTGGCAAGAAGgtatttaact ... ttgttcccagGGATCCGGTCTGTGAG
EST: gi|87154165|gb|DY398954.1|DY398954
EST:     AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGTGGCAAGAAG                         GGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGA
genomic: AGTACACTGTCATCCAAGGCAAGCTTGGTGCTGTTATTCGTGGCAAGAAGgtatttaact ... ttgttcccagGGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatcctctttgatccgattcattcccaactgttgctgcctttgttgttcccagGGATCCGGTCTGTGAGGCCAATAGTATCCTTTATTTATATTTTTCATGTGAGATCCTAAATGAAAATTCACTACTGGATTTGACTTTGCTGGTTTCACAA
        ctttgat  putative branch site (score: 5)
                                       cctttgttgttccc  putative PPT
                  attcatt  TA-rich tract