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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgagtgtctcctttaatgttgatatatactagatcagtaacattccttttcatgatgttgccacatactaaataacgtaaatctgctttgctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATACAAAAATGTCAAAA

Basic information

species Zea mays
transcript GRMZM2G553379_T04
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71316728|gb|DR795038.1|DR795038
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|78089929|gb|DV518303.1|DV518303
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|18659149|gb|BM500180.1|BM500180
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76913834|gb|DV165273.1|DV165273
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|74232113|gb|DT640027.1|DT640027
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|50323594|gb|CO518720.1|CO518720
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|211020972|gb|FL097346.1|FL097346
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGGCAATTGGTGCCACG
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGG-CAATTGGTGCCACG
EST: gi|76011626|gb|DT938796.1|DT938796
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76292653|gb|DV032221.1|DV032221
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|91868416|gb|EB400027.1|EB400027
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|26559940|gb|CA832175.1|CA832175
EST:     TACTCCTATGCAGAAAAGGTTCTTATTTCAGCGAGAATCTGACAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAAT
genomic: TACTCCTATGCAGAAAAGGTTCTTATTTCAGC-AGAATCTGA-AACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAAT
EST: gi|67016868|gb|CO445617.1|CO445617
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|148980413|gb|EE027124.2|EE027124
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|87157251|gb|DY402040.1|DY402040
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76909290|gb|DV163312.1|DV163312
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|71306906|gb|DR789609.1|DR789609
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76909292|gb|DV163313.1|DV163313
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAAACTAAAG-CGAAAGTCGAGACAAT
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAA-CTAAAGGCGAAGGTCGAGACAAT
EST: gi|78082314|gb|DV510726.1|DV510726
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76020109|gb|DT947279.1|DT947279
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAACACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|71325989|gb|DR799677.1|DR799677
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|71440937|gb|DR821987.1|DR821987
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCA-TTGGTGCCACGAGTATAGAAAACT
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACT
EST: gi|149001052|gb|EE038303.2|EE038303
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|76932876|gb|DV173214.1|DV173214
EST:     GCTACTCCTATGCAGAANAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|149079785|gb|EE168784.2|EE168784
EST:     GCTACTCCTATGCAGAANAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|50325812|gb|CO520938.1|CO520938
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|149083438|gb|EE172758.2|EE172758
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|74242354|gb|DT650268.1|DT650268
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|50325934|gb|CO521060.1|CO521060
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|71425445|gb|DR806675.1|DR806675
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|78088356|gb|DV516749.1|DV516749
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|50324244|gb|CO519370.1|CO519370
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|78081870|gb|DV510282.1|DV510282
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|89757241|gb|DY686923.1|DY686923
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
EST: gi|74244253|gb|DT652167.1|DT652167
EST:     GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAG                         GGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA
genomic: GCTACTCCTATGCAGAAAAGGTTCTTATTTCAGCAGAATCTGAAACTCAGgtaaatttaa ... ctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttcatgatgttgccacatactaaataacgtaaatctgctttgctttatgtagGGCAATTGGTGCCACGAGTATAGAAAACTAAAGGCGAAGGTCGAGACAATACAAAAATGTCAAAA
                                        ctttgcttt  CT-rich tract
                       taaataacgtaaat  TA-rich tract