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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggagaagtggagaactggagtagcaccagatgaatctcgcttcttaaagagattttgcatttaagaaaaagaattagactttgcatcagaaggcggatcaacttcatcttcttttttagctgtagttgcgaaacttaatggtgggtgatctgaatttcttttgcctctggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG

Basic information

species Zea mays
transcript GRMZM2G471805_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G471805_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g57330.1 (Oryza sativa), 3'ss of exon 2
gtgaggagaagtggagaactggagtagcaccagatgaatctcgcttcttaaagagattttgcatttaagaaaaagaattagactttgcatcagaaggcggatcaacttcatcttcttttttagctgtagttgcgaaacttaatggtggg-tgatctgaatttcttttgcctctggc--------ctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG
                                                                    | || ||||  | ||  | ||||          |     |    | || | |  |  | ||| | ||  || |||| | |  |||| |   ||| |  | |   ||           |   ||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| ||||||||||||
--------------------------------------------------------------------gtaagagaagcaaacacttcatc----------ttgttctgtaatgctatgtgggaaggagtggtgatgctgaatgctagcctgatttttctttttgcttctattgctgcatattatttgtagGATCCTAACTCGAAGCACCTCGGAACCACGGTCTGGGATGCATCCATGGTGTTCGTCAAGTTCTTG

upper sequence: GRMZM2G471805_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g57330.2 (Oryza sativa), 3'ss of exon 2
gtgaggagaagtggagaactggagtagcaccagatgaatctcgcttcttaaagagattttgcatttaagaaaaagaattagactttgcatcagaaggcggatcaacttcatcttcttttttagctgtagttgcgaaacttaatggtggg-tgatctgaatttcttttgcctctggc--------ctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG----------------------------------
                                                                    | || ||||  | ||  | ||||          |     |    | || | |  |  | ||| | ||  || |||| | |  |||| |   ||| |  | |   ||           |   ||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| ||||||||||||                                  
--------------------------------------------------------------------gtaagagaagcaaacacttcatc----------ttgttctgtaatgctatgtgggaaggagtggtgatgctgaatgctagcctgatttttctttttgcttctattgctgcatattatttgtagGATCCTAACTCGAAGCACCTCGGAACCACGGTCTGGGATGCATCCATGGTGTTCGTCAAGTTCTTGGTAATCTCTTCTCTTTGGACTACTGAGCTATCCT

upper sequence: GRMZM2G471805_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G08490.1 (Glycine max), 3'ss of exon 3
gtgaggagaagtggagaactggagtagcaccagatgaatctcgcttcttaaagagattttgcatttaagaaaaagaattagactttgcatcagaaggcggatcaacttcatcttcttttttagctgtagttgcgaaacttaatggtgggtgatctgaatttcttttgcctctggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG
                                                                        |||| | | |||||     |         |   ||   | |||||| |||  | |  ||   | |   |||    |   ||   |  ||  ||| |          | ||||||| || ||||||||| | ||||| || || |||||||||||| | ||||||||||||||  | 
---------------------------------------------------------------------ttgaagattgatactttctgatatttc-tatgtttgctgttttttctttcttacatatgttt---atatcaaatctctgacaattcaatctttgttttct---------atagGATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGTCAAGTTTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211209107|gb|FL370009.1|FL370009
EST:     CRTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAG                         GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
genomic: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaa ... ggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
EST: gi|211178303|gb|FL423187.1|FL423187
EST:     CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAG                         GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
genomic: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaa ... ggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
EST: gi|211167619|gb|FL375013.1|FL375013
EST:     CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAG                         GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
genomic: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaa ... ggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
EST: gi|211219619|gb|FL402178.1|FL402178
EST:     CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAG                         GATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG
genomic: CGTCGGCTATTTCGCTGGAGGTGATGGGCCACCGGCTACATATTTCACAGgtgaggagaa ... ggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgcgaaacttaatggtgggtgatctgaatttcttttgcctctggcctgacagGATCCAAACTCCAAGCACCTTGGGACCACGGTCTGGGATGCATCAATGGTGTTTGTCAAGTTCTTG
         acttaat  putative branch site (score: 4)
                               tttcttttgcctctg  putative PPT
                             aatttctttt  TA-rich tract