Sequence
atgc intronic sequence ATGC exonic sequencegtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g44890.1 (Oryza sativa), 3'ss of exon 5
gtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
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--------------------------------------------------------------------------cagaataatgtcat-----atatcaactctccattt---tcaatct-tccctaatatgtctt--------tttttgttaattgatttccctgatgttggattcctttacacatgcagAAAGGTCAAAGACAGACCAAGAGATCCTGCTAAGTGGGATGAGATTGCAGATGTTGTGTCTGCACTGTCAATTCCAGTTATAGCTAATGGAGATGTATTT
upper sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA08G36840.1 (Glycine max), 3'ss of exon 5
gtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
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--------------------------------------------------------------------------------aattctttctcctattttc--tgttcaatttcattta-atcactagtattaatctttggt-tattaacacatgctcacttttttccttgttgatctattt-------acagAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGATGTTGTGTCAGCATTATCTATTCCAGTTATAGAAAATGGTGATGTTTTT
upper sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA01G23820.3 (Glycine max), 3'ss of exon 5
gtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttt-tgcttatgttgctcctctttga---aatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
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--------------------------------------------------------------------------------------------taattctctctcctatttctgttca-atttcatttaatcactaatattaa--tctttggttattaacacatgttcacttttttccttgttgatctatttacagAAAAGTCCCAGATAGGCCCAGAGATCCTGCTAAGTGGAATGAAATCGCTGATGTTGTGTCAGCATTATCTATTCCAGTTATAGCAAATGGTGATGTTTTT
upper sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 2
lower sequence: EFJ08104 (Selaginella moellendorffii), 3'ss of exon 5
gtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaatt-agctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
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-------------------------------------------------------------------------gtgatgctacgggattgaaatgcatgtttcctttaacc--gctaatatgt-----gttttctt------ctcacttgttttctcaaacacgtacaatttgtttttcttt-----tccagGAGAATTCCCGATAGACCAAAAGATCGTGCCAAGTGGGATGGAATCGCGGATGTGGTGTCTGCGCTGTCAATTCCTGTCATAGCTAATGGGGATGTTTTC
upper sequence: GRMZM2G468693_T03 (Zea mays), 3'ss of exon 2
lower sequence: EFJ24692 (Selaginella moellendorffii), 3'ss of exon 5
gtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
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---------------------------------------------------------------------------------------------------gtgatgctacgggattgagatgcatgtttcttttaaccgctaattcgtttttccttctcacttgttt-tcttacaaattttttt--ttccagGAGAATCCCCGATAGACCAAAAGATCGTGCCAAGTGGGATGGAATCGCGGATGTGGTGTCTGCGCTGTCAATTCCTGTCATAGCTAATGGGGATGTTTTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78022286|gb|DV490673.1|DV490673EST: GCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAG AAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGA
genomic: GCACGCCGGATTGAGAAAACTGGTGTTCCTGCTCTTGCTGTCCATGGAAGgtaatgacac ... gaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
ctcctctttg CT-rich tract
ttttataattagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgacacatagaattgtatttttgagttgtgatagtctggtagataattgaaaccattcttactctagctttagaagcatgcaattagctatctgcatttttcaattatgtcaatatctccctcattttttttgagtacgcccttttataattagttttgcttatgttgctcctctttgaaatcgcagAAAGATTAAAGATAGACCGAGAGATCTTGCCAAGTGGGATGAGATAGCTGATGTTGTGTCAGCGCTGTCAATTCCAGTTATAGCTAATGGAGATGTCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG