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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcctacgcctccatattatcctttatcgatttcatttgctttacctctccaatccatttgagtatcactattttttgtgcagGAGATTACAAGTATACCAA

Basic information

species Zea mays
transcript GRMZM2G459291_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19350831|gb|BM895363.1|BM895363
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         GAGATTACAAGTATACCAA
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... ttttgtgcagGAGATTACAAGTATACCAA
EST: gi|148945620|gb|EC890877.2|EC890877
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTT-                         --GATTACAAGTATACCAA
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... ttttgtgcagGAGATTACAAGTATACCAA
EST: gi|211541590|gb|FL022793.1|FL022793
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         GAGATTACAAGTATACCAA
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... ttttgtgcagGAGATTACAAGTATACCAA
EST: gi|76018399|gb|DT945569.1|DT945569
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         GAGATTACAAGTATACCAA
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... ttttgtgcagGAGATTACAAGTATACCAA
EST: gi|60348894|gb|DN215867.1|DN215867
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         GAGATTACAAGTATACCAA
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... ttttgtgcagGAGATTACAAGTATACCAA
EST: gi|74239921|gb|DT647835.1|DT647835
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         GAGATTACAAGTATACCAA
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... ttttgtgcagGAGATTACAAGTATACCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttcatttgctttacctctccaatccatttgagtatcactattttttgtgcagGAGATTACAAGTATACCAA
                                        ctatttttt  CT-rich tract
                                   tatcactatttttt  TA-rich tract