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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttcctacgcctccatattatcctttatcgatttcatttgctttacctctccaatccatttgagtatcactattttttgtgcaggagATTACAAGTATACCAA

Basic information

species Zea mays
transcript GRMZM2G459291_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348894|gb|DN215867.1|DN215867
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         G
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... tgtgcaggag-
EST: gi|60348894|gb|DN215867.1|DN215867
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         G
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... tgtgcaggag-
EST: gi|74239921|gb|DT647835.1|DT647835
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTGGAG                       
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTT---Ggtaacttcct ... tgtgcagg
EST: gi|76018399|gb|DT945569.1|DT945569
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTGGAG                       
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTT---Ggtaacttcct ... tgtgcagg
EST: gi|148945620|gb|EC890877.2|EC890877
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTG                         ATTACAAGTATACCAA
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTTGgtaacttcct ... tgtgcaggagATTACAAGTATACCAA
EST: gi|211541590|gb|FL022793.1|FL022793
EST:     GTGGAACTGGCCGCTCTCCTGCACGACGTTGGAG                       
genomic: GTGGAACTGGCCGCTCTCCTGCACGACGTT---Ggtaacttcct ... tgtgcagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcatttgctttacctctccaatccatttgagtatcactattttttgtgcaggagATTACAAGTATACCAA
                                     ctatttttt  CT-rich tract
                                tatcactatttttt  TA-rich tract